CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g037442m.g
(
Citrus sinensis
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
orange1.1g037442m.g
T258812_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g037442m
MADS box
10
57
MVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGKPFSF
Links
Other
MADS box
family TFs
Other
Citrus sinensis
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
1.000
29693.m002039
Ricinus communis
29693.m002039
I
0.917
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.896
SapurV1A.0560s0040
Salix purpurea
SapurV1A.0560s0040
N
0.896
SapurV1A.2238s0010
Salix purpurea
SapurV1A.2238s0010
N
0.896
TCM_029518
Theobroma cacao
TCM_029518
I
0.896
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.896
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.875
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.854
Lus10040832.g
Linum usitatissimum
Lus10040832.g
N
0.854
Cla019897
Citrullus lanatus
Cla019897
N
0.854
Pm030655
Prunus mume
Pm030655
I
0.854
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.833
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.833
MDP0000274606
Malus domestica
MDP0000274606
N
0.833
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.833
Cucsa.212320
Cucumis sativus
Cucsa.212320
N
0.833
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.812
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.812
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.792
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.792
Ca_05023
Cicer arietinum
Ca_05023
I
0.792
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.792
AGL29
Arabidopsis thaliana
AT2G34440
I
0.792
MDP0000120467
Malus domestica
MDP0000120467
N
0.792
Lus10016563.g
Linum usitatissimum
Lus10016563.g
N
0.792
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.792
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.792
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.771
Bra021910
Brassica rapa
Bra021910
I
0.771
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.771
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.771
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.771
Lus10011787.g
Linum usitatissimum
Lus10011787.g
N
0.771
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.750
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.750
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.750
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.750
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.750
Ca_24185
Cicer arietinum
Ca_24185
I
0.750
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.750
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.750
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.750
MTR_8g046350
Medicago truncatula
MTR_8g046350
N
0.750
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.729
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.729
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.729
GLYMA08G03793
Glycine max
GLYMA08G03793
N
0.729
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.729
AGL91
Arabidopsis thaliana
AT3G66656
D
0.729
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.729
GLYMA08G38880
Glycine max
GLYMA08G38880
I
0.729
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.729
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.708
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.708
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.708
TCM_006325
Theobroma cacao
TCM_006325
N
0.708
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.708
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.708
Bostr.22252s0371
Boechera stricta
Bostr.22252s0371
I
0.708
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.708
GLYMA08G03820
Glycine max
GLYMA08G03820
I
0.708
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.707