orange1.1g039494m.g (Citrus sinensis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 orange1.1g039494m.g T258816_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g039494m MADS box 3 50

Links

Other MADS box family TFs
Other Citrus sinensis TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10006405m.g Citrus clementina Ciclev10006405m.g N 1.000
Ciclev10006957m.g Citrus clementina Ciclev10006957m.g N 0.854
Ciclev10006530m.g Citrus clementina Ciclev10006530m.g N 0.854
orange1.1g044532m.g Citrus sinensis orange1.1g044532m.g N 0.854
Ciclev10006439m.g Citrus clementina Ciclev10006439m.g N 0.812
Ciclev10007090m.g Citrus clementina Ciclev10007090m.g N 0.792
orange1.1g040485m.g Citrus sinensis orange1.1g040485m.g N 0.792
Ciclev10006559m.g Citrus clementina Ciclev10006559m.g N 0.792
Ciclev10007104m.g Citrus clementina Ciclev10007104m.g N 0.750
29693.m002041 Ricinus communis 29693.m002041 N 0.750
Ciclev10006588m.g Citrus clementina Ciclev10006588m.g N 0.744
cassava39120.m1 Manihot esculenta cassava39120.m1 N 0.729
orange1.1g047467m.g Citrus sinensis orange1.1g047467m.g N 0.729
Ciclev10007015m.g Citrus clementina Ciclev10007015m.g N 0.729
Ciclev10006958m.g Citrus clementina Ciclev10006958m.g N 0.729
Ciclev10006503m.g Citrus clementina Ciclev10006503m.g N 0.729
POPTR_0004s13590 Populus trichocarpa POPTR_0004s13590 N 0.708
POPTR_0001s25850 Populus trichocarpa POPTR_0001s25850 N 0.708
cassava9834.m1 Manihot esculenta cassava9834.m1 N 0.708
cassava9826.m1 Manihot esculenta cassava9826.m1 N 0.708
Ciclev10006587m.g Citrus clementina Ciclev10006587m.g N 0.700