orange1.1g040096m.g (Citrus sinensis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 orange1.1g040096m.g T258822_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.896 0.896
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.875 0.875
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.854 0.854
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.812 0.812
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.729 0.729
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.708 0.708
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.708 0.708
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g040096m MADS box 10 57

Links

Other MADS box family TFs
Other Citrus sinensis TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 1.000
Ca_13111 Cicer arietinum Ca_13111 I 0.917
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.917
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.917
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.917
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.896
TCM_035212 Theobroma cacao TCM_035212 I 0.896
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.896
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.896
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.896
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.896
29648.m001978 Ricinus communis 29648.m001978 I 0.896
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.875
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.875
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.875
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.875
PI Vitis vinifera VIT_18s0001g01760 I 0.875
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.875
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.875
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.875
Pm004718 Prunus mume Pm004718 I 0.875
Cla023547 Citrullus lanatus Cla023547 I 0.875
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.875
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.875
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.875
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.854
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.854
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.854
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.833
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.833
mgf006158m Mimulus guttatus mgf006158m I 0.833
mgf008207m Mimulus guttatus mgf008207m I 0.833
mgf003143m Mimulus guttatus mgf003143m I 0.833
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.833
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.833
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.833
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.812
Ca_03887 Cicer arietinum Ca_03887 I 0.812
Bo3g010390 Brassica oleracea Bo3g010390 I 0.812
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.812
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.812
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.812
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.812
PI Arabidopsis thaliana AT5G20240 D 0.812
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.812
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.812
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.812
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.800
Bra006549 Brassica rapa Bra006549 I 0.792
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.792
Bo3g014100 Brassica oleracea Bo3g014100 I 0.792
Bo2g020730 Brassica oleracea Bo2g020730 I 0.792
Bra020093 Brassica rapa Bra020093 I 0.792
Bra002285 Brassica rapa Bra002285 I 0.771
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.771
Bo9g152080 Brassica oleracea Bo9g152080 I 0.771
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.771
Pm006266 Prunus mume Pm006266 I 0.771
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.750
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.750
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.750
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.750
AP3 Vitis vinifera VIT_18s0001g13460 I 0.750
TCM_000266 Theobroma cacao TCM_000266 I 0.750
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.750
Pm026712 Prunus mume Pm026712 I 0.745
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.729
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.729
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.729
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.729
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.729
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.729
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.729
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.729
MDP0000224779 Malus domestica MDP0000224779 I 0.729
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.729
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.729
Ca_04909 Cicer arietinum Ca_04909 I 0.729
Cla021117 Citrullus lanatus Cla021117 I 0.729
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.729
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.729
MDP0000133037 Malus domestica MDP0000133037 I 0.729
MDP0000184294 Malus domestica MDP0000184294 I 0.729
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.729
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.729
MDP0000315938 Malus domestica MDP0000315938 I 0.729
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
AP3 Arabidopsis thaliana AT3G54340 D 0.708
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.708
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.708
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.708
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.708
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.708
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.708
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.708
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.708
Ca_01994 Cicer arietinum Ca_01994 I 0.708
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.708
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.708
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.708
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.708
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.708
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.708
29782.m000119 Ricinus communis 29782.m000119 I 0.708
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.708
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.708
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.708
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.708
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.708
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.708
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.708
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.708
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.708