orange1.1g042044m.g (Citrus sinensis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 orange1.1g042044m.g T258829_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.875 0.875
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.833 0.833
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.812 0.812
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.792 0.792
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.708 0.708
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.708 0.708
Q9ZRA5_MALDO
M11030_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_04 		0.708 0.708
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g042044m MADS box 10 57

Links

Other MADS box family TFs
Other Citrus sinensis TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 1.000
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.896
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.896
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.896
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.896
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.875
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.875
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.875
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.875
Ca_13111 Cicer arietinum Ca_13111 I 0.875
29648.m001978 Ricinus communis 29648.m001978 I 0.875
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.875
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.854
Cla023547 Citrullus lanatus Cla023547 I 0.854
TCM_035212 Theobroma cacao TCM_035212 I 0.854
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.854
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.854
Pm004718 Prunus mume Pm004718 I 0.854
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.854
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.854
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.854
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.854
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.833
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.833
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.833
PI Vitis vinifera VIT_18s0001g01760 I 0.833
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.833
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.833
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.833
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.833
mgf003143m Mimulus guttatus mgf003143m I 0.812
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.812
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.812
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.812
mgf008207m Mimulus guttatus mgf008207m I 0.812
mgf006158m Mimulus guttatus mgf006158m I 0.812
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.812
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.812
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.792
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.792
Bo3g010390 Brassica oleracea Bo3g010390 I 0.792
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.792
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.792
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.792
PI Arabidopsis thaliana AT5G20240 D 0.792
Ca_03887 Cicer arietinum Ca_03887 I 0.792
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.792
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.792
Bo3g014100 Brassica oleracea Bo3g014100 I 0.771
Bo2g020730 Brassica oleracea Bo2g020730 I 0.771
Bra002285 Brassica rapa Bra002285 I 0.771
Bo9g152080 Brassica oleracea Bo9g152080 I 0.771
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.771
Bra020093 Brassica rapa Bra020093 I 0.771
Bra006549 Brassica rapa Bra006549 I 0.771
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.750
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.750
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.750
Ca_04909 Cicer arietinum Ca_04909 I 0.729
Cla021117 Citrullus lanatus Cla021117 I 0.729
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.729
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.729
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.729
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.729
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.729
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.729
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.729
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.729
Pm006266 Prunus mume Pm006266 I 0.729
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
GRMZM2G032339 Zea mays GRMZM2G032339 I 0.708
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.708
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.708
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.708
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.708
GRMZM2G147716 Zea mays GRMZM2G147716 I 0.708
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.708
GSMUA_Achr7G00460_001 Musa acuminata GSMUA_Achr7G00460_001 I 0.708
GSMUA_Achr4G23540_001 Musa acuminata GSMUA_Achr4G23540_001 I 0.708
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.708
GRMZM2G553379 Zea mays GRMZM2G553379 I 0.708
MAD14_ORYSJ Oryza sativa MAD14_ORYSJ D 0.708
MDP0000289836 Malus domestica MDP0000289836 I 0.708
BGIOSGA009798 Oryza indica BGIOSGA009798 I 0.708
BRADI1G21980 Brachypodium distachyon BRADI1G21980 I 0.708
AP3 Arabidopsis thaliana AT3G54340 D 0.708
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.708
Q9ZRA5_MALDO Malus domestica Q9ZRA5_MALDO D 0.708
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.708
GLYMA05G07380 Glycine max GLYMA05G07380 I 0.708
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.708
Pavir.Ia00530 Panicum virgatum Pavir.Ia00530 I 0.708
Pavir.J03093 Panicum virgatum Pavir.J03093 I 0.708
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.708
MTR_4g109830 Medicago truncatula MTR_4g109830 I 0.708
Sb01g007790 Sorghum bicolor Sb01g007790 I 0.708
Sb02g038780 Sorghum bicolor Sb02g038780 I 0.708
OS03G0752800 Oryza sativa OS03G0752800 I 0.708
ORUFI03G35930 Oryza rufipogon ORUFI03G35930 I 0.708
cassava46263.m1 Manihot esculenta cassava46263.m1 I 0.708
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.708
Si030896m.g Setaria italica Si030896m.g I 0.708
Ca_01994 Cicer arietinum Ca_01994 I 0.708
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.708
TCM_000266 Theobroma cacao TCM_000266 I 0.708
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.708
ORGLA03G0314900 Oryza glaberrima ORGLA03G0314900 I 0.708
OPUNC03G31590 Oryza punctata OPUNC03G31590 I 0.708
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.708
OB03G41490 Oryza brachyantha OB03G41490 I 0.708
MTR_5g046790 Medicago truncatula MTR_5g046790 I 0.708
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.708
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.708
OBART03G34520 Oryza barthii OBART03G34520 I 0.708
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.708
ONIVA03G35980 Oryza nivara ONIVA03G35980 I 0.708
OMERI03G31620 Oryza meridionalis OMERI03G31620 I 0.708
OLONG_010503 Oryza longistaminata OLONG_010503 I 0.708
Aquca_002_00911 Aquilegia coerulea Aquca_002_00911 I 0.708
Pm026712 Prunus mume Pm026712 I 0.702