Pavir.Bb00005 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Bb00005 T258859_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.781 0.781
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.750 0.750
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.750 0.750
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.750 0.750
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.750 0.750
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.719 0.719
Q9LEH9_HORVU
M10983_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM9_01 		0.719 0.719
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb00005.1.p MADS box 280 311

Links

Other MADS box family TFs
Other Panicum virgatum TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM01G46440 Oryza glumaepatula OGLUM01G46440 I 0.906
OBART01G42170 Oryza barthii OBART01G42170 I 0.906
LPERR01G36730 Leersia perrieri LPERR01G36730 I 0.906
BGIOSGA005076 Oryza indica BGIOSGA005076 I 0.906
OMERI01G39210 Oryza meridionalis OMERI01G39210 I 0.906
ORGLA01G0361900 Oryza glaberrima ORGLA01G0361900 I 0.906
ONIVA01G48250 Oryza nivara ONIVA01G48250 I 0.906
OPUNC01G41110 Oryza punctata OPUNC01G41110 I 0.906
GRMZM2G171650 Zea mays GRMZM2G171650 I 0.875
GRMZM2G320549 Zea mays GRMZM2G320549 I 0.875
Sb03g044170 Sorghum bicolor Sb03g044170 I 0.875
BRADI4G30090 Brachypodium distachyon BRADI4G30090 I 0.875
TRIUR3_28473 Triticum urartu TRIUR3_28473 I 0.875
TRIUR3_30073 Triticum urartu TRIUR3_30073 I 0.875
Pavir.J08622 Panicum virgatum Pavir.J08622 I 0.875
MLOC_12290 Hordeum vulgare MLOC_12290 I 0.844
TRIUR3_19056 Triticum urartu TRIUR3_19056 I 0.844
BRADI2G59187 Brachypodium distachyon BRADI2G59187 I 0.844
F775_43625 Aegilops tauschii F775_43625 I 0.844
Traes_7DS_4DF7EB08F Triticum aestivum Traes_7DS_4DF7EB08F I 0.812
TRAES3BF009000040CFD_g Triticum aestivum TRAES3BF009000040CFD_g I 0.812
F775_00385 Aegilops tauschii F775_00385 I 0.812
Pavir.J19662 Panicum virgatum Pavir.J19662 I 0.812
GSMUA_Achr11G15560_001 Musa acuminata GSMUA_Achr11G15560_001 I 0.812
F775_23758 Aegilops tauschii F775_23758 I 0.812
GSMUA_AchrUn_randomG20290_001 Musa acuminata GSMUA_AchrUn_randomG20290_001 I 0.812
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.812
TRIUR3_21732 Triticum urartu TRIUR3_21732 I 0.812
OBART03G01800 Oryza barthii OBART03G01800 I 0.781
OBART08G21560 Oryza barthii OBART08G21560 I 0.781
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I 0.781
LPERR08G18330 Leersia perrieri LPERR08G18330 I 0.781
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.781
MLOC_76418 Hordeum vulgare MLOC_76418 I 0.781
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.781
Traes_4BL_B8FFB0854 Triticum aestivum Traes_4BL_B8FFB0854 I 0.781
OB03G11760 Oryza brachyantha OB03G11760 I 0.781
BGIOSGA029053 Oryza indica BGIOSGA029053 I 0.781
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.781
ORGLA08G0229900 Oryza glaberrima ORGLA08G0229900 I 0.781
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.781
PK19764.1 Cannabis sativa PK19764.1 I 0.781
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.781
ORUFI08G24040 Oryza rufipogon ORUFI08G24040 I 0.781
OS08G0531900 Oryza sativa OS08G0531900 I 0.781
MADS50 Oryza sativa OS03G0122600 D 0.781
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.781
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.781
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.781
OMERI06G13650 Oryza meridionalis OMERI06G13650 I 0.781
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.781
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.781
Si038299m.g Setaria italica Si038299m.g I 0.781
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.781
ONIVA08G24570 Oryza nivara ONIVA08G24570 I 0.781
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.781
OGLUM08G22840 Oryza glumaepatula OGLUM08G22840 I 0.781
TRIUR3_27077 Triticum urartu TRIUR3_27077 I 0.781
VIT_15s0048g01240 Vitis vinifera VIT_15s0048g01240 I 0.781
GRMZM2G070034 Zea mays GRMZM2G070034 I 0.781
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.781
Pavir.J22336 Panicum virgatum Pavir.J22336 I 0.781
Ca_16423 Cicer arietinum Ca_16423 I 0.781
GSMUA_Achr5G20280_001 Musa acuminata GSMUA_Achr5G20280_001 I 0.781
Thhalv10001632m.g Eutrema salsugineum Thhalv10001632m.g I 0.750
Sb07g026180 Sorghum bicolor Sb07g026180 I 0.750
Eucgr.C01942 Eucalyptus grandis Eucgr.C01942 I 0.750
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.750
Thhalv10028949m.g Eutrema salsugineum Thhalv10028949m.g I 0.750
AGL20 Arabidopsis lyrata scaffold_403512.1 I 0.750
Cagra.7242s0001 Capsella grandiflora Cagra.7242s0001 I 0.750
Carubv10024046m.g Capsella rubella Carubv10024046m.g I 0.750
Carubv10001906m.g Capsella rubella Carubv10001906m.g I 0.750
PRUPE_ppa014428mg Prunus persica PRUPE_ppa014428mg I 0.750
Ciclev10023160m.g Citrus clementina Ciclev10023160m.g I 0.750
Si014540m.g Setaria italica Si014540m.g I 0.750
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.750
Lus10014144.g Linum usitatissimum Lus10014144.g I 0.750
orange1.1g028363m.g Citrus sinensis orange1.1g028363m.g I 0.750
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.750
Pavir.Ia04538 Panicum virgatum Pavir.Ia04538 I 0.750
Lus10014143.g Linum usitatissimum Lus10014143.g I 0.750
AMTR_s00001p00218870 Amborella trichopoda AMTR_s00001p00218870 I 0.750
Eucgr.D02425 Eucalyptus grandis Eucgr.D02425 I 0.750
Lus10006715.g Linum usitatissimum Lus10006715.g I 0.750
Cagra.0050s0134 Capsella grandiflora Cagra.0050s0134 I 0.750
Lus10006716.g Linum usitatissimum Lus10006716.g I 0.750
Eucgr.D01939 Eucalyptus grandis Eucgr.D01939 I 0.750
TCM_005456 Theobroma cacao TCM_005456 I 0.750
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I 0.750
Pm018089 Prunus mume Pm018089 I 0.750
cassava28648.m1 Manihot esculenta cassava28648.m1 I 0.750
cassava30125.valid.m1 Manihot esculenta cassava30125.valid.m1 I 0.750
Cla011687 Citrullus lanatus Cla011687 I 0.750
TRIUR3_18962 Triticum urartu TRIUR3_18962 I 0.750
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.750
PGSC0003DMG400000008 Solanum tuberosum PGSC0003DMG400000008 I 0.750
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I 0.750
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.750
cassava723.valid.m1 Manihot esculenta cassava723.valid.m1 I 0.750
Cucsa.302640 Cucumis sativus Cucsa.302640 I 0.750
mgf021705m Mimulus guttatus mgf021705m I 0.750
Pavir.J26790 Panicum virgatum Pavir.J26790 I 0.750
Bostr.25463s0138 Boechera stricta Bostr.25463s0138 I 0.750
SapurV1A.0282s0240 Salix purpurea SapurV1A.0282s0240 I 0.750
TCM_016147 Theobroma cacao TCM_016147 I 0.750
mgf007062m Mimulus guttatus mgf007062m I 0.750
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.750
SapurV1A.0045s0580 Salix purpurea SapurV1A.0045s0580 I 0.750
mgf006616m Mimulus guttatus mgf006616m I 0.750
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.750
Bostr.25993s0208 Boechera stricta Bostr.25993s0208 I 0.750
POPTR_0001s08510 Populus trichocarpa POPTR_0001s08510 I 0.750
MTR_7g075870 Medicago truncatula MTR_7g075870 I 0.750
Bo9g093920 Brassica oleracea Bo9g093920 I 0.750
Bra039324 Brassica rapa Bra039324 I 0.750
Bra000393 Brassica rapa Bra000393 I 0.750
Bo4g195720 Brassica oleracea Bo4g195720 I 0.750
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.750
Bo3g038880 Brassica oleracea Bo3g038880 I 0.750
OB10G24040 Oryza brachyantha OB10G24040 I 0.750
OB08G28340 Oryza brachyantha OB08G28340 I 0.750
GLYMA18G45780 Glycine max GLYMA18G45780 I 0.750
GLYMA09G40230 Glycine max GLYMA09G40230 I 0.750
BRADI3G41297 Brachypodium distachyon BRADI3G41297 I 0.750
Bra029424 Brassica rapa Bra029424 I 0.750
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.750
BRADI3G00730 Brachypodium distachyon BRADI3G00730 I 0.750
F775_08627 Aegilops tauschii F775_08627 I 0.750
F775_29801 Aegilops tauschii F775_29801 I 0.750
GLYMA07G08831 Glycine max GLYMA07G08831 I 0.750
MADS56 Oryza sativa OS10G0536100 I 0.750
AGL14 Arabidopsis lyrata fgenesh2_kg.6__3138__AT4G11880.1 I 0.750
OBART10G16960 Oryza barthii OBART10G16960 I 0.750
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.750
AMTR_s00001p00266470 Amborella trichopoda AMTR_s00001p00266470 I 0.750
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.750
SOC1 Arabidopsis thaliana AT2G45660 D 0.750
AGL14 Arabidopsis thaliana AT4G11880 I 0.750
OPUNC02G00040 Oryza punctata OPUNC02G00040 I 0.750
OPUNC08G18260 Oryza punctata OPUNC08G18260 I 0.750
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.750
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.750
MADS56 Oryza indica BGIOSGA033356 I 0.750
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.750
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.750
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.750
Eucgr.B00633 Eucalyptus grandis Eucgr.B00633 I 0.719
Eucgr.K02711 Eucalyptus grandis Eucgr.K02711 I 0.719
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.719
Gorai.004G132000 Gossypium raimondii Gorai.004G132000 I 0.719
Gorai.008G115200 Gossypium raimondii Gorai.008G115200 I 0.719
Gorai.006G268400 Gossypium raimondii Gorai.006G268400 I 0.719
Ciclev10012594m.g Citrus clementina Ciclev10012594m.g I 0.719
Eucgr.E00516 Eucalyptus grandis Eucgr.E00516 I 0.719
Bra020826 Brassica rapa Bra020826 I 0.719
Thhalv10001597m.g Eutrema salsugineum Thhalv10001597m.g I 0.719
Bra013662 Brassica rapa Bra013662 I 0.719
PK14825.1 Cannabis sativa PK14825.1 I 0.719
Bra025126 Brassica rapa Bra025126 I 0.719
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.719
chr4.CM0126.630.nc Lotus japonicus chr4.CM0126.630.nc I 0.719
Bra004927 Brassica rapa Bra004927 I 0.719
Bo6g108600 Brassica oleracea Bo6g108600 I 0.719
Pavir.Gb01001 Panicum virgatum Pavir.Gb01001 I 0.719
SapurV1A.0323s0170 Salix purpurea SapurV1A.0323s0170 I 0.719
MDP0000605482 Malus domestica MDP0000605482 I 0.719
BGIOSGA007333 Oryza indica BGIOSGA007333 I 0.719
Bo4g024850 Brassica oleracea Bo4g024850 I 0.719
Bo3g165710 Brassica oleracea Bo3g165710 I 0.719
BGIOSGA026939 Oryza indica BGIOSGA026939 I 0.719
Bo4g024840 Brassica oleracea Bo4g024840 I 0.719
MDP0000574222 Malus domestica MDP0000574222 I 0.719
MDP0000289858 Malus domestica MDP0000289858 I 0.719
Bra004361 Brassica rapa Bra004361 I 0.719
Bo1g031900 Brassica oleracea Bo1g031900 I 0.719
Bra004928 Brassica rapa Bra004928 I 0.719
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.719
Bra000392 Brassica rapa Bra000392 I 0.719
MDP0000148857 Malus domestica MDP0000148857 I 0.719
MDP0000270062 Malus domestica MDP0000270062 I 0.719
MDP0000248130 Malus domestica MDP0000248130 I 0.719
MDP0000205637 Malus domestica MDP0000205637 I 0.719
AGL19 Arabidopsis thaliana AT4G22950 I 0.719
AGL19 Arabidopsis lyrata fgenesh2_kg.7__2003__AT4G22950.1 I 0.719
Traes_6AS_D6ABA1D79 Triticum aestivum Traes_6AS_D6ABA1D79 I 0.719
OBART08G15610 Oryza barthii OBART08G15610 I 0.719
Traes_1DL_D5BBCA2D0 Triticum aestivum Traes_1DL_D5BBCA2D0 I 0.719
OGLUM08G16360 Oryza glumaepatula OGLUM08G16360 I 0.719
Traes_6DS_2BAD7A60A Triticum aestivum Traes_6DS_2BAD7A60A I 0.719
Traes_7DS_4AF5C695F Triticum aestivum Traes_7DS_4AF5C695F I 0.719
TRIUR3_28216 Triticum urartu TRIUR3_28216 I 0.719
MLOC_56472 Hordeum vulgare MLOC_56472 I 0.719
MTR_1g041615 Medicago truncatula MTR_1g041615 I 0.719
MTR_3g084980 Medicago truncatula MTR_3g084980 I 0.719
TCM_014337 Theobroma cacao TCM_014337 I 0.719
OLONG_011763 Oryza longistaminata OLONG_011763 I 0.719
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.719
OPUNC10G15300 Oryza punctata OPUNC10G15300 I 0.719
POPTR_0007s03310 Populus trichocarpa POPTR_0007s03310 I 0.719
ORGLA08G0137000 Oryza glaberrima ORGLA08G0137000 I 0.719
PRUPE_ppa1027139mg Prunus persica PRUPE_ppa1027139mg I 0.719
Q9LEH9_HORVU Hordeum vulgare Q9LEH9_HORVU D 0.719
ONIVA08G16700 Oryza nivara ONIVA08G16700 I 0.719
Si010898m.g Setaria italica Si010898m.g I 0.719
Sb06g026300 Sorghum bicolor Sb06g026300 I 0.719
OPUNC08G13690 Oryza punctata OPUNC08G13690 I 0.719
GSMUA_Achr9G01370_001 Musa acuminata GSMUA_Achr9G01370_001 I 0.719
GSMUA_Achr2G04340_001 Musa acuminata GSMUA_Achr2G04340_001 I 0.719
cassava2637.m1 Manihot esculenta cassava2637.m1 I 0.719
cassava19939.m1 Manihot esculenta cassava19939.m1 I 0.719
cassava10843.m1 Manihot esculenta cassava10843.m1 I 0.719
Q9ATE3_PETHY Petunia x hybrida Q9ATE3_PETHY D 0.719
GLYMA03G02191 Glycine max GLYMA03G02191 I 0.719
F775_29383 Aegilops tauschii F775_29383 I 0.719
Cagra.6745s0008 Capsella grandiflora Cagra.6745s0008 I 0.719
BRADI3G41260 Brachypodium distachyon BRADI3G41260 I 0.719
Bostr.7867s0083 Boechera stricta Bostr.7867s0083 I 0.719
F775_10590 Aegilops tauschii F775_10590 I 0.719
Pm030595 Prunus mume Pm030595 I 0.719
GRMZM2G097059 Zea mays GRMZM2G097059 I 0.719
VIT_03s0167g00100 Vitis vinifera VIT_03s0167g00100 I 0.719
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.719
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.719
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.719
GRMZM2G098986 Zea mays GRMZM2G098986 I 0.719
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.719
Ca_11363 Cicer arietinum Ca_11363 I 0.719
VIT_17s0000g05000 Vitis vinifera VIT_17s0000g05000 I 0.719
VIT_17s0000g01230 Vitis vinifera VIT_17s0000g01230 I 0.719
Carubv10005697m.g Capsella rubella Carubv10005697m.g I 0.719