CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Cb00838
(
Panicum virgatum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Pavir.Cb00838
T258870_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
A1YJE4_HORVD
M10900_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM10_01
0.729
0.729
Q9ATE2_PETHY
M11007_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP29_01
0.729
0.729
MADS18
M10973_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS18_01
0.729
0.729
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.729
0.729
MAD55_ORYSJ
M10962_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS55_01
0.729
0.729
Q4U0F1_WHEAT
M10978_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAVRT2_01
0.729
0.729
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.708
0.708
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.708
0.708
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.708
0.708
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.708
0.708
squamosa
M02697_2.00
Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK
SELEX
Mathelier et al.(2014)
MA0082.1
0.708
0.708
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.708
0.708
AGL15
M10927_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.708
0.708
AGL15
M10928_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.708
0.708
SOC1
M10915_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.708
0.708
MADS5
M10970_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_02
0.708
0.708
Q38742_ANTMA
M11000_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SQUA_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Cb00838.2.p
MADS box
12
59
RIENSVSRQVTFSKRLRGLAKKARELAVLCDADVALIVFSDKGRLHDF
Pavir.Cb00838.3.p
MADS box
12
59
RIENSVSRQVTFSKRLRGLAKKARELAVLCDADVALIVFSDKGRLHDF
Pavir.Cb00838.4.p
MADS box
12
59
RIENSVSRQVTFSKRLRGLAKKARELAVLCDADVALIVFSDKGRLHDF
Pavir.Cb00838.5.p
MADS box
12
59
RIENSVSRQVTFSKRLRGLAKKARELAVLCDADVALIVFSDKGRLHDF
Pavir.Cb00838.6.p
MADS box
12
59
RIENSVSRQVTFSKRLRGLAKKARELAVLCDADVALIVFSDKGRLHDF
Links
Other
MADS box
family TFs
Other
Panicum virgatum
TFs
471 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy