Pavir.Fb00782 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Fb00782 T258906_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
A1YJE4_HORVD
M10900_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM10_01
0.759 0.759
MAD55_ORYSJ
M10962_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS55_01
0.724 0.724
Q4U0F1_WHEAT
M10978_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAVRT2_01
0.724 0.724
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb00782.1.p MADS box 18 46

Links

Other MADS box family TFs
Other Panicum virgatum TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.931
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.931
Si019951m.g Setaria italica Si019951m.g I 0.931
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.931
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.931
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.931
ONIVA09G00960 Oryza nivara ONIVA09G00960 N 0.862
OPUNC01G44670 Oryza punctata OPUNC01G44670 N 0.862
ONIVA01G52000 Oryza nivara ONIVA01G52000 N 0.862
OLONG_027660 Oryza longistaminata OLONG_027660 N 0.862
OBART09G00850 Oryza barthii OBART09G00850 N 0.862
OGLUM01G50090 Oryza glumaepatula OGLUM01G50090 N 0.862
OLONG_018222 Oryza longistaminata OLONG_018222 N 0.862
LPERR02G10390 Leersia perrieri LPERR02G10390 N 0.862
OBART01G45740 Oryza barthii OBART01G45740 N 0.862
OMERI09G00900 Oryza meridionalis OMERI09G00900 N 0.862
OPUNC09G00580 Oryza punctata OPUNC09G00580 N 0.862
OS01G0975800 Oryza sativa OS01G0975800 N 0.862
BGIOSGA030217 Oryza indica BGIOSGA030217 N 0.862
OS09G0116800 Oryza sativa OS09G0116800 N 0.862
BGIOSGA005284 Oryza indica BGIOSGA005284 N 0.862
ORUFI09G00870 Oryza rufipogon ORUFI09G00870 N 0.862
ORUFI01G49230 Oryza rufipogon ORUFI01G49230 N 0.862
ORGLA01G0394900 Oryza glaberrima ORGLA01G0394900 N 0.862
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.862
ORGLA09G0007400 Oryza glaberrima ORGLA09G0007400 N 0.862
OGLUM09G01140 Oryza glumaepatula OGLUM09G01140 N 0.862
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.828
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.828
F775_04223 Aegilops tauschii F775_04223 I 0.828
F775_43210 Aegilops tauschii F775_43210 I 0.828
Si032189m.g Setaria italica Si032189m.g N 0.793
OB01G55160 Oryza brachyantha OB01G55160 N 0.793
GRMZM2G472100 Zea mays GRMZM2G472100 N 0.793
OB06G21580 Oryza brachyantha OB06G21580 N 0.793
ORGLA02G0045500 Oryza glaberrima ORGLA02G0045500 N 0.759
Sb07g007306 Sorghum bicolor Sb07g007306 N 0.759
ORUFI02G05030 Oryza rufipogon ORUFI02G05030 N 0.759
ORGLA02G0288600 Oryza glaberrima ORGLA02G0288600 I 0.759
BGIOSGA007600 Oryza indica BGIOSGA007600 N 0.759
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.759
GRMZM2G046885 Zea mays GRMZM2G046885 I 0.759
OBART02G04930 Oryza barthii OBART02G04930 N 0.759
LPERR02G27330 Leersia perrieri LPERR02G27330 I 0.759
ONIVA02G05120 Oryza nivara ONIVA02G05120 N 0.759
OGLUM02G04740 Oryza glumaepatula OGLUM02G04740 N 0.759
Pavir.Bb00803 Panicum virgatum Pavir.Bb00803 N 0.724
SELMODRAFT_450776 Selaginella moellendorffii SELMODRAFT_450776 N 0.724
SELMODRAFT_450775 Selaginella moellendorffii SELMODRAFT_450775 N 0.724
TRIUR3_03219 Triticum urartu TRIUR3_03219 I 0.724
PDK_20s1551551g001 Phoenix dactylifera PDK_20s1551551g001 I 0.724
SELMODRAFT_450772 Selaginella moellendorffii SELMODRAFT_450772 N 0.724
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.724
gw1.81.151.1 Physcomitrella patens gw1.81.151.1 N 0.724
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.724
TRIUR3_30073 Triticum urartu TRIUR3_30073 I 0.724
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.724
Si038960m.g Setaria italica Si038960m.g N 0.724
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.724
SELMODRAFT_450777 Selaginella moellendorffii SELMODRAFT_450777 N 0.724
OPUNC02G04080 Oryza punctata OPUNC02G04080 N 0.724
GRMZM5G814279 Zea mays GRMZM5G814279 I 0.724
MAD55_ORYSJ Oryza sativa MAD55_ORYSJ D 0.724
OB06G16920 Oryza brachyantha OB06G16920 I 0.724
OBART09G00790 Oryza barthii OBART09G00790 N 0.724
F775_26069 Aegilops tauschii F775_26069 I 0.724
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.724
BGIOSGA021662 Oryza indica BGIOSGA021662 I 0.724
BGIOSGA030219 Oryza indica BGIOSGA030219 N 0.724
BRADI1G20090 Brachypodium distachyon BRADI1G20090 N 0.724
BRADI1G45807 Brachypodium distachyon BRADI1G45807 I 0.724
OGLUM09G01090 Oryza glumaepatula OGLUM09G01090 N 0.724
OMERI02G05750 Oryza meridionalis OMERI02G05750 N 0.724
ORUFI09G00820 Oryza rufipogon ORUFI09G00820 N 0.724
OS06G0217300 Oryza sativa OS06G0217300 I 0.724
OS09G0116000 Oryza sativa OS09G0116000 N 0.724
Q4U0F1_WHEAT Triticum aestivum Q4U0F1_WHEAT D 0.724
ORGLA09G0007100 Oryza glaberrima ORGLA09G0007100 N 0.724
ORGLA06G0069900 Oryza glaberrima ORGLA06G0069900 I 0.724
OMERI06G08590 Oryza meridionalis OMERI06G08590 I 0.724
ONIVA09G00820 Oryza nivara ONIVA09G00820 N 0.724
OPUNC06G07080 Oryza punctata OPUNC06G07080 I 0.724
Sb02g006710 Sorghum bicolor Sb02g006710 N 0.724