Pavir.Gb00526 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Gb00526 T258913_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.771 0.771
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.729 0.729
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.729 0.729
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.729 0.729
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00526.1.p MADS box 10 57
Pavir.Gb00526.2.p MADS box 10 57

Links

Other MADS box family TFs
Other Panicum virgatum TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ga00461 Panicum virgatum Pavir.Ga00461 I 0.979
GRMZM2G005155 Zea mays GRMZM2G005155 I 0.979
GRMZM2G135018 Zea mays GRMZM2G135018 I 0.979
Sb06g028420 Sorghum bicolor Sb06g028420 I 0.979
AC233912.1_FG001 Zea mays AC233912.1_FG001 I 0.958
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.958
GRMZM2G128953 Zea mays GRMZM2G128953 I 0.958
OBART04G25610 Oryza barthii OBART04G25610 I 0.938
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.938
OB04G32080 Oryza brachyantha OB04G32080 I 0.938
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.938
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.938
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.938
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.938
MADS31 Oryza sativa OS04G0614100 I 0.938
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.938
GRMZM2G446426 Zea mays GRMZM2G446426 N 0.917
BRADI5G21700 Brachypodium distachyon BRADI5G21700 I 0.917
GRMZM2G137387 Zea mays GRMZM2G137387 I 0.917
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.917
F775_05654 Aegilops tauschii F775_05654 I 0.896
GRMZM2G148220 Zea mays GRMZM2G148220 N 0.896
MLOC_12133 Hordeum vulgare MLOC_12133 I 0.896
Traes_2AL_8DF89AA72 Triticum aestivum Traes_2AL_8DF89AA72 I 0.896
TRIUR3_18402 Triticum urartu TRIUR3_18402 I 0.896
Traes_2DL_6CD5A5CD9 Triticum aestivum Traes_2DL_6CD5A5CD9 I 0.896
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.875
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.833
TRIUR3_26896 Triticum urartu TRIUR3_26896 I 0.792
Traes_6DS_9BBDCC9F7 Triticum aestivum Traes_6DS_9BBDCC9F7 I 0.792
MLOC_65966 Hordeum vulgare MLOC_65966 I 0.792
Traes_6AS_57E50EE92 Triticum aestivum Traes_6AS_57E50EE92 I 0.792
BRADI3G05260 Brachypodium distachyon BRADI3G05260 I 0.792
Traes_6BS_5789476CB Triticum aestivum Traes_6BS_5789476CB I 0.792
F775_30836 Aegilops tauschii F775_30836 I 0.792
M17_MAIZE Zea mays M17_MAIZE D 0.771
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.771
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.771
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.771
F775_15097 Aegilops tauschii F775_15097 I 0.771
OB02G14670 Oryza brachyantha OB02G14670 I 0.771
Si018183m.g Setaria italica Si018183m.g I 0.771
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.771
OBART02G05380 Oryza barthii OBART02G05380 I 0.771
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.771
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.771
MADS29 Oryza sativa OS02G0170300 I 0.771
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.771
AMTR_s00002p00262770 Amborella trichopoda AMTR_s00002p00262770 I 0.771
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.771
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.771
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.771
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.771
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.763
Solyc04g076680.2 Solanum lycopersicum Solyc04g076680.2 I 0.750
PGSC0003DMG400009349 Solanum tuberosum PGSC0003DMG400009349 I 0.750
Bostr.26833s0022 Boechera stricta Bostr.26833s0022 I 0.750
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.750
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.750
Bo1g007520 Brassica oleracea Bo1g007520 I 0.750
GRMZM2G130382 Zea mays GRMZM2G130382 I 0.750
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.750
Bra011509 Brassica rapa Bra011509 I 0.750
Pavir.Da00991 Panicum virgatum Pavir.Da00991 I 0.750
AGL16 Arabidopsis lyrata fgenesh2_kg.5__2158__AT3G57230.1 I 0.750
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.733
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.729
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.729
LjSGA_021013.1 Lotus japonicus LjSGA_021013.1 I 0.729
Thhalv10026116m.g Eutrema salsugineum Thhalv10026116m.g I 0.729
Thhalv10004954m.g Eutrema salsugineum Thhalv10004954m.g I 0.729
ORGLA06G0125600 Oryza glaberrima ORGLA06G0125600 I 0.729
PK01421.1 Cannabis sativa PK01421.1 I 0.729
PRUPE_ppa019267mg Prunus persica PRUPE_ppa019267mg I 0.729
ORUFI06G14980 Oryza rufipogon ORUFI06G14980 I 0.729
LjSGA_019451.1 Lotus japonicus LjSGA_019451.1 I 0.729
OS06G0347700 Oryza sativa OS06G0347700 I 0.729
Pavir.Ea03607 Panicum virgatum Pavir.Ea03607 I 0.729
MDP0000268317 Malus domestica MDP0000268317 I 0.729
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.729
Pm019404 Prunus mume Pm019404 I 0.729
Cla023427 Citrullus lanatus Cla023427 I 0.729
Lus10031665.g Linum usitatissimum Lus10031665.g I 0.729
Lus10027404.g Linum usitatissimum Lus10027404.g I 0.729
Cagra.0578s0054 Capsella grandiflora Cagra.0578s0054 I 0.729
Carubv10017951m.g Capsella rubella Carubv10017951m.g I 0.729
Bostr.20505s0022 Boechera stricta Bostr.20505s0022 I 0.729
Ca_19854 Cicer arietinum Ca_19854 I 0.729
Carubv10026982m.g Capsella rubella Carubv10026982m.g I 0.729
Cagra.4003s0006 Capsella grandiflora Cagra.4003s0006 I 0.729
Solyc01g106170.2 Solanum lycopersicum Solyc01g106170.2 I 0.729
SELMODRAFT_450937 Selaginella moellendorffii SELMODRAFT_450937 I 0.729
SELMODRAFT_450818 Selaginella moellendorffii SELMODRAFT_450818 I 0.729
Traes_5DS_82FA431DB Triticum aestivum Traes_5DS_82FA431DB I 0.729
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.729
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.729
TT16 Vitis vinifera VIT_01s0011g01560 I 0.729
Carubv10027142m.g Capsella rubella Carubv10027142m.g I 0.729
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.729
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.729
BGIOSGA022872 Oryza indica BGIOSGA022872 I 0.729
AGL42 Arabidopsis thaliana AT5G62165 D 0.729
OMERI06G15180 Oryza meridionalis OMERI06G15180 I 0.729
OLONG_018231 Oryza longistaminata OLONG_018231 I 0.729
OGLUM06G15040 Oryza glumaepatula OGLUM06G15040 I 0.729
OB01G48510 Oryza brachyantha OB01G48510 I 0.729
Bra017638 Brassica rapa Bra017638 I 0.729
OBART06G14060 Oryza barthii OBART06G14060 I 0.729
AGL16 Arabidopsis thaliana AT3G57230 D 0.729
Bo7g116760 Brassica oleracea Bo7g116760 I 0.729
OPUNC06G13170 Oryza punctata OPUNC06G13170 I 0.729
ONIVA06G16870 Oryza nivara ONIVA06G16870 I 0.729
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.723
PK27158.1 Cannabis sativa PK27158.1 I 0.714
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.708
Ciclev10032489m.g Citrus clementina Ciclev10032489m.g I 0.708
Ciclev10006654m.g Citrus clementina Ciclev10006654m.g I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
GLYMA01G02525 Glycine max GLYMA01G02525 I 0.708
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.708
Eucgr.K00200 Eucalyptus grandis Eucgr.K00200 I 0.708
evm.TU.supercontig_4.204 Carica papaya evm.TU.supercontig_4.204 I 0.708
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.708
Eucgr.K00208 Eucalyptus grandis Eucgr.K00208 I 0.708
Eucgr.K00204 Eucalyptus grandis Eucgr.K00204 I 0.708
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.708
Eucgr.K00203 Eucalyptus grandis Eucgr.K00203 I 0.708
Eucgr.K00194 Eucalyptus grandis Eucgr.K00194 I 0.708
Carubv10027093m.g Capsella rubella Carubv10027093m.g I 0.708
Cagra.0277s0030 Capsella grandiflora Cagra.0277s0030 I 0.708
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.708
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.708
GRMZM2G018589 Zea mays GRMZM2G018589 I 0.708
GRMZM2G055782 Zea mays GRMZM2G055782 I 0.708
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.708
Bostr.15774s0334 Boechera stricta Bostr.15774s0334 I 0.708
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.708
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.708
GLYMA09G33451 Glycine max GLYMA09G33451 I 0.708
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.708
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.708
mgf021543m Mimulus guttatus mgf021543m I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
gene26429-v1.0-hybrid Fragaria vesca gene26429-v1.0-hybrid I 0.708
Bostr.15774s0333 Boechera stricta Bostr.15774s0333 I 0.708
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.708
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.708
BGIOSGA004940 Oryza indica BGIOSGA004940 I 0.708
Bo00946s010 Brassica oleracea Bo00946s010 I 0.708
Bo2g162920 Brassica oleracea Bo2g162920 I 0.708
Bra000696 Brassica rapa Bra000696 I 0.708
Pavir.Ab02921 Panicum virgatum Pavir.Ab02921 I 0.708
SapurV1A.0103s0250 Salix purpurea SapurV1A.0103s0250 I 0.708
AGL71 Arabidopsis thaliana AT5G51870 I 0.708
PK10594.1 Cannabis sativa PK10594.1 I 0.708
PK19764.1 Cannabis sativa PK19764.1 I 0.708
PK08595.1 Cannabis sativa PK08595.1 I 0.708
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.708
Thhalv10015303m.g Eutrema salsugineum Thhalv10015303m.g I 0.708
ANR1 Arabidopsis thaliana AT2G14210 I 0.708
orange1.1g036652m.g Citrus sinensis orange1.1g036652m.g I 0.708
orange1.1g033826m.g Citrus sinensis orange1.1g033826m.g I 0.708
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.708
Bra035907 Brassica rapa Bra035907 I 0.708
Gorai.013G069000 Gossypium raimondii Gorai.013G069000 I 0.708
Gorai.012G134200 Gossypium raimondii Gorai.012G134200 I 0.708
Gorai.007G043400 Gossypium raimondii Gorai.007G043400 I 0.708
Gorai.007G360800 Gossypium raimondii Gorai.007G360800 I 0.708
Lus10028214.g Linum usitatissimum Lus10028214.g I 0.708
Bra029281 Brassica rapa Bra029281 I 0.708
MDP0000254052 Malus domestica MDP0000254052 I 0.708
O82698_MALDO Malus domestica O82698_MALDO D 0.708
MDP0000228942 Malus domestica MDP0000228942 I 0.708
MDP0000156783 Malus domestica MDP0000156783 I 0.708
Lus10042918.g Linum usitatissimum Lus10042918.g I 0.708
MDP0000136650 Malus domestica MDP0000136650 I 0.708
F775_27908 Aegilops tauschii F775_27908 I 0.708
cassava5692.m1 Manihot esculenta cassava5692.m1 I 0.708
Si003917m.g Setaria italica Si003917m.g I 0.708
Si019880m.g Setaria italica Si019880m.g I 0.708
OBART04G13800 Oryza barthii OBART04G13800 I 0.708
Si002551m.g Setaria italica Si002551m.g I 0.708
OGLUM01G43970 Oryza glumaepatula OGLUM01G43970 I 0.708
OLONG_003033 Oryza longistaminata OLONG_003033 I 0.708
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.708
Solyc02g091550.1 Solanum lycopersicum Solyc02g091550.1 I 0.708
OBART01G39740 Oryza barthii OBART01G39740 I 0.708
Traes_1AS_985BB33A1 Triticum aestivum Traes_1AS_985BB33A1 I 0.708
Traes_1BS_1202C8C0D Triticum aestivum Traes_1BS_1202C8C0D I 0.708
Traes_1DS_F22A3DB6A Triticum aestivum Traes_1DS_F22A3DB6A I 0.708
TCM_015049 Theobroma cacao TCM_015049 I 0.708
Solyc12g088080.1 Solanum lycopersicum Solyc12g088080.1 I 0.708
Solyc11g005120.1 Solanum lycopersicum Solyc11g005120.1 I 0.708
Solyc11g028020.1 Solanum lycopersicum Solyc11g028020.1 I 0.708
Sb04g028960 Sorghum bicolor Sb04g028960 I 0.708
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.708
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.708
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.708
MADS21 Oryza sativa OS01G0886200 I 0.708
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.708
OPUNC01G38480 Oryza punctata OPUNC01G38480 I 0.708
OPUNC04G12890 Oryza punctata OPUNC04G12890 I 0.708
ORUFI01G43090 Oryza rufipogon ORUFI01G43090 I 0.708
ONIVA01G44610 Oryza nivara ONIVA01G44610 I 0.708
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.708
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.708
Sb03g042080 Sorghum bicolor Sb03g042080 I 0.708
OMERI01G36640 Oryza meridionalis OMERI01G36640 I 0.708
PRUPE_ppa011140mg Prunus persica PRUPE_ppa011140mg I 0.708
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.708
PGSC0003DMG400025525 Solanum tuberosum PGSC0003DMG400025525 I 0.708
OB06G22200 Oryza brachyantha OB06G22200 I 0.708
OB04G21020 Oryza brachyantha OB04G21020 I 0.708
AGL71 Arabidopsis lyrata Al_scaffold_0008_1558 I 0.708
Pm021962 Prunus mume Pm021962 I 0.708
FBP24_PETHY Petunia x hybrida FBP24_PETHY D 0.708
Pm004218 Prunus mume Pm004218 I 0.708
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.708
Cla002388 Citrullus lanatus Cla002388 I 0.708
Cla006326 Citrullus lanatus Cla006326 I 0.708
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.708
30221.m002218 Ricinus communis 30221.m002218 I 0.708
Cucsa.115490 Cucumis sativus Cucsa.115490 I 0.708
Cucsa.251140 Cucumis sativus Cucsa.251140 I 0.708
ORGLA01G0336500 Oryza glaberrima ORGLA01G0336500 I 0.708
cassava39185.m1 Manihot esculenta cassava39185.m1 I 0.708
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.708
cassava38700.m1 Manihot esculenta cassava38700.m1 I 0.708
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.708
GSMUA_Achr3G07310_001 Musa acuminata GSMUA_Achr3G07310_001 I 0.708
TRIUR3_09266 Triticum urartu TRIUR3_09266 I 0.708
LPERR01G34270 Leersia perrieri LPERR01G34270 I 0.708
Traes_7BL_F5B6736D0 Triticum aestivum Traes_7BL_F5B6736D0 I 0.708
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.708
MTR_5g031000 Medicago truncatula MTR_5g031000 I 0.708
MTR_1g053070 Medicago truncatula MTR_1g053070 I 0.708
GSMUA_Achr8G28100_001 Musa acuminata GSMUA_Achr8G28100_001 I 0.708
VIT_00s0211g00150 Vitis vinifera VIT_00s0211g00150 I 0.708
TT16 Vitis vinifera VIT_10s0042g00820 I 0.708
VIT_16s0022g02400 Vitis vinifera VIT_16s0022g02400 I 0.708
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.708
GOA Vitis vinifera VIT_02s0025g02350 I 0.708
VIT_00s0211g00180 Vitis vinifera VIT_00s0211g00180 I 0.708
GSMUA_Achr7G12610_001 Musa acuminata GSMUA_Achr7G12610_001 I 0.708
GSMUA_Achr5G24560_001 Musa acuminata GSMUA_Achr5G24560_001 I 0.708
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.702
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.702
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.702