Pavir.Gb01527 (Panicum virgatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pavir.Gb01527 T258916_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9FVN1_MAIZE
M10982_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_03
0.979 0.979
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA

TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.833 0.833
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS

STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.833 0.833
Q9ATE8_PETHY
M11011_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP21_01
0.771 0.771
Q40591_TOBAC
M11002_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_03
0.771 0.771
MADS2
M10966_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_02
0.771 0.771
AGL1
M02694_2.00
Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN

NDTWCCHNWWWWGGHAHN
SELEX
Mathelier et al.(2014)
MA0585.1
0.750 0.750
AGL1
M10920_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_01
0.750 0.750
AGL1
M10921_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_02
0.750 0.750
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.750 0.750
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.750 0.750
Q9AR49_MAIZE
M10980_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M29_01
0.750 0.750
SHP2
M10914_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SHP2_01
0.750 0.750
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN

NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.729 0.729
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND

HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.729 0.729
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN

NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.729 0.729
AG
M10924_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.729 0.729
AG
M10925_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.729 0.729
AG_TOBAC
M10995_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.729 0.729
SOC1
M10915_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.729 0.729
AG
M10926_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.729 0.729
Q9ATE9_PETHY
M11012_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP20_01
0.729 0.729
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.729 0.729
Q08711_PETHY
M10999_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.729 0.729
O82698_MALDO
M11021_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS10_01
0.729 0.729
O82699_MALDO
M11022_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.729 0.729
MADS3_ORYSJ
M10963_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.729 0.729
AG_PETHY
M10994_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.729 0.729
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW

WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.708 0.708
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.708 0.708
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.708 0.708
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.708 0.708
Q8VWZ3_MALDO
M11025_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.708 0.708
Q8VWZ2_MALDO
M11024_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_02
0.708 0.708
MAD17_ORYSJ
M10961_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.708 0.708
MADS50
M10968_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.708 0.708
MADS6
M10967_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01527.1.p MADS box 10 57

Links

Other MADS box family TFs
Other Panicum virgatum TFs

1019 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSGMOG00000001211 Gadus morhua ENSGMOG00000001211 I 0.000
ARID5A Microcebus murinus ENSMICG00000001964 I 0.000
ARID5A Sorex araneus ENSSARG00000003004 I 0.000
orange1.1g009744m.g Citrus sinensis orange1.1g009744m.g I 0.000
OS06G0622300 Oryza sativa OS06G0622300 I 0.000
SapurV1A.2929s0030 Salix purpurea SapurV1A.2929s0030 N 0.000
Pavir.J25952 Panicum virgatum Pavir.J25952 N 0.000
Pavir.Da00612 Panicum virgatum Pavir.Da00612 N 0.000
HHAL003716-PA Halyomorpha halys HHAL003716-PA N 0.000
Sjc_0111140 Schistosoma japonicum Sjc_0111140 N 0.000
SapurV1A.0216s0430 Salix purpurea SapurV1A.0216s0430 N 0.000
Myotis_brandtii_Arid3c_10010321 Myotis brandtii Myotis_brandtii_Arid3c_10010321 N 0.000
Lus10008531.g Linum usitatissimum Lus10008531.g N 0.000
Myotis_brandtii_KDM5D_10002268 Myotis brandtii Myotis_brandtii_KDM5D_10002268 N 0.000
cassava32082.m1 Manihot esculenta cassava32082.m1 N 0.000
cassava33852.m1 Manihot esculenta cassava33852.m1 N 0.000
e_gw1.8.356.1 Monosiga brevicollis e_gw1.8.356.1 N 0.000
gw1.8.90.1 Volvox carteri gw1.8.90.1 N 0.000
evm.TU.supercontig_70.18 Carica papaya evm.TU.supercontig_70.18 N 0.000
gene11760-v1.0-hybrid Fragaria vesca gene11760-v1.0-hybrid N 0.000
Genemark1.2983_g Coccomyxa subellipsoidea C169 Genemark1.2983_g N 0.000
Genemark.397_g Heterobasidion annosum Genemark.397_g N 0.000
GG.C169_S05_00378 Chlorella vulgaris GG.C169_S05_00378 N 0.000
SVUK_0000804601 Strongylus vulgaris SVUK_0000804601 N 0.000
SROB_0001561301 Schistosoma rodhaini SROB_0001561301 N 0.000
SPER_0003827801 Spirometra erinaceieuropaei SPER_0003827801 N 0.000
SPER_0003392901 Spirometra erinaceieuropaei SPER_0003392901 N 0.000
SPER_0000445801 Spirometra erinaceieuropaei SPER_0000445801 N 0.000
SPER_0000246801 Spirometra erinaceieuropaei SPER_0000246801 N 0.000
SMTD_0001549501 Schistosoma mattheei SMTD_0001549501 N 0.000
SMTD_0000131801 Schistosoma mattheei SMTD_0000131801 N 0.000
SBAD_0000429301 Soboliphyme baturini SBAD_0000429301 N 0.000
OFLC_0000209301 Onchocerca flexuosa OFLC_0000209301 N 0.000
OESDEN_17751 Oesophagostomum dentatum OESDEN_17751 N 0.000
HPBE_0000220801 Heligmosomoides bakeri HPBE_0000220801 N 0.000
HCOI00647600 Haemonchus contortus HCOI00647600 N 0.000
ASIM_0001975501 Anisakis simplex ASIM_0001975501 N 0.000
ANCCAN_16550 Ancylostoma caninum ANCCAN_16550 N 0.000
ACOM023832 Anopheles coluzzii ACOM023832 N 0.000
PDK_20s1315202g001 Phoenix dactylifera PDK_20s1315202g001 N 0.000
TRE_0000846701 Trichobilharzia regenti TRE_0000846701 N 0.000
Myotis_brandtii_ARID2_10029491 Myotis brandtii Myotis_brandtii_ARID2_10029491 N 0.000
Hsal_11763--XP_001120115.1_APIME Harpegnathos saltator Hsal_11763--XP_001120115.1_APIME N 0.000
GK21672 Drosophila willistoni FBgn0223657 N 0.000
GD20218 Drosophila simulans FBgn0191696 N 0.000
GL12242 Drosophila persimilis FBgn0149849 N 0.000
F775_31416 Aegilops tauschii F775_31416 N 0.000
F775_22367 Aegilops tauschii F775_22367 N 0.000
ARID5B Tursiops truncatus ENSTTRG00000009968 N 0.000
ENSCJAG00000034027 Callithrix jacchus ENSCJAG00000034027 N 0.000
ENSCING00000011332 Ciona intestinalis ENSCING00000011332 N 0.000
ENSAMEG00000013019 Ailuropoda melanoleuca ENSAMEG00000013019 N 0.000
CapteG108943 Capitella teleta CapteG108943 N 0.000
Bra015737 Brassica rapa Bra015737 N 0.000
BOTBODRAFT_44712 Botryobasidium botryosum BOTBODRAFT_44712 N 0.000
BOTBODRAFT_182015 Botryobasidium botryosum BOTBODRAFT_182015 N 0.000
BOTBODRAFT_174219 Botryobasidium botryosum BOTBODRAFT_174219 N 0.000
Bo4g012540 Brassica oleracea Bo4g012540 N 0.000
ACRE_008210 Acremonium chrysogenum ACRE_008210 N 0.000
GK25519 Drosophila willistoni FBgn0227478 N 0.000
MCINX010724 Melitaea cinxia MCINX010724 N 0.000
MESCA003685 Megaselia scalaris MESCA003685 N 0.000
Gfo_R015467 Geospiza fortis Gfo_R015467 N 0.000
Cflo_11029--XP_001120115.1_APIME Camponotus floridanus Cflo_11029--XP_001120115.1_APIME N 0.000
Aan_R005479 Calypte anna Aan_R005479 N 0.000
YQE_11989 Dendroctonus ponderosae YQE_11989 N 0.000
TRIUR3_29596 Triticum urartu TRIUR3_29596 N 0.000
Traes_2AS_40ED2C7BC Triticum aestivum Traes_2AS_40ED2C7BC N 0.000
SPU_009801 Strongylocentrotus purpuratus SPU_009801 N 0.000
SPU_003500 Strongylocentrotus purpuratus SPU_003500 N 0.000
Solyc12g038740.1 Solanum lycopersicum Solyc12g038740.1 N 0.000
PHUM027610 Pediculus humanus PHUM027610 N 0.000
PHACADRAFT_251691 Phanerochaete carnosa PHACADRAFT_251691 N 0.000
PGSC0003DMG401018896 Solanum tuberosum PGSC0003DMG401018896 N 0.000
PGSC0003DMG400047019 Solanum tuberosum PGSC0003DMG400047019 N 0.000
ORGLA07G0233500 Oryza glaberrima ORGLA07G0233500 N 0.000
NV31651 Nasonia vitripennis NV31651 N 0.000
MLOC_7381 Hordeum vulgare MLOC_7381 N 0.000
ACEP25970 Atta cephalotes ACEP25970 N 0.000