Thhalv10002353m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10002353m.g T259099_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10002353m MADS box 10 55

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.977
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.909
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.909
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.909
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.909
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.909
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.909
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.909
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.886
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.864
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.864
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.864
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.864
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.864
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.841
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.841
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.841
Thhalv10019667m.g Eutrema salsugineum Thhalv10019667m.g N 0.773
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.750
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.727
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.727
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.727
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.727
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.705
Bra029469 Brassica rapa Bra029469 I 0.705
Bo9g078450 Brassica oleracea Bo9g078450 I 0.705
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.705
TCM_026842 Theobroma cacao TCM_026842 I 0.705
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.705
Ca_13275 Cicer arietinum Ca_13275 I 0.705
AGL80 Arabidopsis thaliana AT5G48670 D 0.705