Thhalv10007954m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10007954m.g T259122_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10007954m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_13266 Aegilops tauschii F775_13266 I 0.783
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.783
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.792
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.739
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.854
AGL30 Arabidopsis thaliana AT2G03060 I 0.739
AGL65 Arabidopsis thaliana AT1G18750 D 0.854
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.854
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.708
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.717
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.729
Bo6g109050 Brassica oleracea Bo6g109050 I 0.739
Bo8g104060 Brassica oleracea Bo8g104060 I 0.938
Bo8g068060 Brassica oleracea Bo8g068060 I 0.938
Bo7g080890 Brassica oleracea Bo7g080890 I 0.717
Bra024792 Brassica rapa Bra024792 I 0.717
Bra031049 Brassica rapa Bra031049 I 0.938
Bra016544 Brassica rapa Bra016544 I 0.938
Bra004393 Brassica rapa Bra004393 I 0.739
Bra025685 Brassica rapa Bra025685 I 0.854
PK03147.1 Cannabis sativa PK03147.1 I 0.708
PK21701.1 Cannabis sativa PK21701.1 I 0.833
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.854
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.708
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.708
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.739
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.854
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.708
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.739
Ca_18082 Cicer arietinum Ca_18082 I 0.739
Ca_16376 Cicer arietinum Ca_16376 I 0.717
Cla018884 Citrullus lanatus Cla018884 I 0.729
Cla010361 Citrullus lanatus Cla010361 I 0.792
Ciclev10010259m.g Citrus clementina Ciclev10010259m.g N 0.717
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.833
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.708
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.833
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.708
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.804
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.729
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.833
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.739
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.854
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.792
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.870
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.854
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.854
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.783
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.761
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.833
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.812
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.708
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.708
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.739
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.833
MDP0000193129 Malus domestica MDP0000193129 I 0.792
MDP0000773068 Malus domestica MDP0000773068 I 0.778
MDP0000146231 Malus domestica MDP0000146231 I 0.761
MDP0000146415 Malus domestica MDP0000146415 I 0.778
MDP0000919323 Malus domestica MDP0000919323 I 0.778
MDP0000147667 Malus domestica MDP0000147667 I 0.750
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.833
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.854
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.729
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.708
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.739
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.854
mgf004425m Mimulus guttatus mgf004425m I 0.771
mgf000945m Mimulus guttatus mgf000945m I 0.771
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.792
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.739
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.787
OBART11G21780 Oryza barthii OBART11G21780 N 0.708
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.708
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.761
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.717
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.761
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.717
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.708
OS11G0658700 Oryza sativa OS11G0658700 N 0.708
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.792
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.792
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.830
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.804
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.708
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.717
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.729
Pm024895 Prunus mume Pm024895 I 0.771
Pm006479 Prunus mume Pm006479 I 0.783
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.783
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.771
30138.m004061 Ricinus communis 30138.m004061 I 0.875
29813.m001508 Ricinus communis 29813.m001508 I 0.761
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.708
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.739
Si028357m.g Setaria italica Si028357m.g N 0.761
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.750
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.702
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.848
TCM_011687 Theobroma cacao TCM_011687 I 0.739
TCM_014051 Theobroma cacao TCM_014051 I 0.854
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.783
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.783
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.783
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.783
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.812
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.804