Thhalv10015598m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10015598m.g T259138_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.729 0.729
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.729 0.729
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.729 0.729
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10015598m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL15 Arabidopsis lyrata fgenesh2_kg.6__1336__AT5G13790.1 I 0.729
Bostr.2902s0113 Boechera stricta Bostr.2902s0113 I 0.729
Thhalv10017787m.g Eutrema salsugineum Thhalv10017787m.g N 0.729
AGL15 Arabidopsis thaliana AT5G13790 D 0.729
Carubv10002596m.g Capsella rubella Carubv10002596m.g I 0.708
Cagra.5588s0006 Capsella grandiflora Cagra.5588s0006 I 0.708
Aquca_005_00633 Aquilegia coerulea Aquca_005_00633 I 0.708
Bo3g009340 Brassica oleracea Bo3g009340 I 0.708
Bra006214 Brassica rapa Bra006214 I 0.708
Aquca_003_00853 Aquilegia coerulea Aquca_003_00853 I 0.708
PK10580.1 Cannabis sativa PK10580.1 I 0.704