Thhalv10019481m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10019481m.g T259153_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019481m MADS box 10 58

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.854
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.854
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.833
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.833
Bra029469 Brassica rapa Bra029469 I 0.833
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.833
Bo9g078450 Brassica oleracea Bo9g078450 I 0.833
Bra018490 Brassica rapa Bra018490 I 0.833
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.833
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.812
Bo2g104810 Brassica oleracea Bo2g104810 I 0.812
AGL80 Arabidopsis thaliana AT5G48670 D 0.792
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.778
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.771
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.771
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.771
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.750
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.750
TCM_026842 Theobroma cacao TCM_026842 I 0.750
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.750
30128.m008984 Ricinus communis 30128.m008984 I 0.729
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.729
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.729
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
Cla005226 Citrullus lanatus Cla005226 I 0.711
Bra041022 Brassica rapa Bra041022 I 0.711
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.708
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.708
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.708
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.708
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.708
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.708
Ca_13275 Cicer arietinum Ca_13275 I 0.708
MDP0000846004 Malus domestica MDP0000846004 I 0.708
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.708
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.708
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.708
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.702