Thhalv10019686m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10019686m.g T259158_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL67
M10907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G77950_01 		0.833 0.833
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.708 0.708
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.708 0.708
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.708 0.708
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.708 0.708
Q40882_PETHY
M11003_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP11_01 		0.708 0.708
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.708 0.708
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.708 0.708
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.708 0.708
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019686m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g121640 Brassica oleracea Bo6g121640 I 1.000
Bra015643 Brassica rapa Bra015643 I 1.000
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.979
AGL66 Arabidopsis thaliana AT1G77980 I 0.979
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.979
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.979
Bra012308 Brassica rapa Bra012308 I 0.958
Bo8g071330 Brassica oleracea Bo8g071330 I 0.958
Bo7g060150 Brassica oleracea Bo7g060150 I 0.958
Bra016386 Brassica rapa Bra016386 I 0.958
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.958
AGL104 Arabidopsis thaliana AT1G22130 I 0.958
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.958
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.938
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.938
MDP0000243965 Malus domestica MDP0000243965 I 0.938
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.938
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.938
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.938
TCM_034970 Theobroma cacao TCM_034970 I 0.938
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.938
TCM_001182 Theobroma cacao TCM_001182 I 0.938
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.917
cassava22012.m1 Manihot esculenta cassava22012.m1 I 0.917
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.917
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.917
POPTR_0007s05980 Populus trichocarpa POPTR_0007s05980 I 0.917
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.917
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.917
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.917
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.917
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.917
Pm019181 Prunus mume Pm019181 I 0.917
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.917
OB08G26170 Oryza brachyantha OB08G26170 I 0.917
29908.m005982 Ricinus communis 29908.m005982 I 0.917
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.917
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.917
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.917
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.917
SapurV1A.0293s0130 Salix purpurea SapurV1A.0293s0130 I 0.917
OS06G0223300 Oryza sativa OS06G0223300 I 0.896
Pavir.Db01574 Panicum virgatum Pavir.Db01574 I 0.896
OB06G17440 Oryza brachyantha OB06G17440 I 0.896
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.896
OBART06G07860 Oryza barthii OBART06G07860 I 0.896
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.896
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.896
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.896
OS08G0494100 Oryza sativa OS08G0494100 I 0.896
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.896
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.896
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.896
OBART08G19110 Oryza barthii OBART08G19110 I 0.896
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.896
BRADI3G39177 Brachypodium distachyon BRADI3G39177 I 0.896
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.896
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.896
F775_03584 Aegilops tauschii F775_03584 I 0.896
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.896
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.896
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.896
Cla014721 Citrullus lanatus Cla014721 I 0.896
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.896
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.896
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.896
Ca_24539 Cicer arietinum Ca_24539 I 0.896
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.896
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.896
Si013985m.g Setaria italica Si013985m.g I 0.875
30170.m013776 Ricinus communis 30170.m013776 I 0.875
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.875
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.875
Gorai.007G242000 Gossypium raimondii Gorai.007G242000 I 0.875
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.875
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.875
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.875
Si008439m.g Setaria italica Si008439m.g I 0.875
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.875
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.875
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.854
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.854
fgenesh2_kg.2__2089__AT1G77950.1 Arabidopsis lyrata fgenesh2_kg.2__2089__AT1G77950.1 I 0.854
Thhalv10019795m.g Eutrema salsugineum Thhalv10019795m.g I 0.854
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.854
fgenesh2_kg.2__2429__AT1G77950.2 Arabidopsis lyrata fgenesh2_kg.2__2429__AT1G77950.2 I 0.854
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.854
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.854
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.854
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.833
mgf017317m Mimulus guttatus mgf017317m I 0.833
PRUPE_ppa020874mg Prunus persica PRUPE_ppa020874mg I 0.833
Pm005355 Prunus mume Pm005355 I 0.833
TCM_034757 Theobroma cacao TCM_034757 I 0.833
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.833
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.833
AGL67 Arabidopsis thaliana AT1G77950 D 0.833
MDP0000152821 Malus domestica MDP0000152821 I 0.833
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.812
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 0.812
Ca_01572 Cicer arietinum Ca_01572 I 0.812
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.812
Carubv10021761m.g Capsella rubella Carubv10021761m.g I 0.812
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.812
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.812
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.793
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.792
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.792
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.792
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.792
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.788
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.771
Solyc03g019710.2 Solanum lycopersicum Solyc03g019710.2 I 0.771
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.771
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.771
Q40172_SOLLC Solanum lycopersicum Q40172_SOLLC I 0.771
PGSC0003DMG401015205 Solanum tuberosum PGSC0003DMG401015205 I 0.771
POPTR_0005s16500 Populus trichocarpa POPTR_0005s16500 N 0.769
Bra015645 Brassica rapa Bra015645 I 0.750
Bo6g121610 Brassica oleracea Bo6g121610 I 0.750
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.750
mgf019100m Mimulus guttatus mgf019100m N 0.750
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.750
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.750
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.750
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.750
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.750
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.743
MTR_5g061740 Medicago truncatula MTR_5g061740 N 0.741
Gorai.009G358500 Gossypium raimondii Gorai.009G358500 I 0.737
Cucsa.392160 Cucumis sativus Cucsa.392160 I 0.729
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.729
PGSC0003DMG400025525 Solanum tuberosum PGSC0003DMG400025525 I 0.729
MDP0000268317 Malus domestica MDP0000268317 I 0.729
ORUFI08G24040 Oryza rufipogon ORUFI08G24040 I 0.729
Solyc11g028020.1 Solanum lycopersicum Solyc11g028020.1 I 0.729
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.729
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.729
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.729
mgf006616m Mimulus guttatus mgf006616m I 0.729
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.729
Gorai.007G043400 Gossypium raimondii Gorai.007G043400 I 0.729
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.729
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.729
Ca_06280 Cicer arietinum Ca_06280 I 0.729
Pavir.Ea03607 Panicum virgatum Pavir.Ea03607 I 0.729
Cla002664 Citrullus lanatus Cla002664 I 0.729
PK21701.1 Cannabis sativa PK21701.1 I 0.729
MDP0000179718 Malus domestica MDP0000179718 I 0.727
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
Thhalv10004767m.g Eutrema salsugineum Thhalv10004767m.g I 0.708
Bra013662 Brassica rapa Bra013662 I 0.708
Gorai.001G172200 Gossypium raimondii Gorai.001G172200 I 0.708
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.708
Bra026543 Brassica rapa Bra026543 I 0.708
evm.TU.supercontig_13.95 Carica papaya evm.TU.supercontig_13.95 I 0.708
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.708
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
MADS56 Oryza sativa OS10G0536100 I 0.708
OPUNC01G38480 Oryza punctata OPUNC01G38480 I 0.708
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.708
SEP4 Arabidopsis lyrata Al_scaffold_0005_309 I 0.708
Eucgr.E01330 Eucalyptus grandis Eucgr.E01330 I 0.708
OLONG_003033 Oryza longistaminata OLONG_003033 I 0.708
Bo9g074400 Brassica oleracea Bo9g074400 I 0.708
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.708
Bo2g137070 Brassica oleracea Bo2g137070 I 0.708
OMERI01G36640 Oryza meridionalis OMERI01G36640 I 0.708
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.708
MDP0000193129 Malus domestica MDP0000193129 I 0.708
MADS56 Oryza indica BGIOSGA033356 I 0.708
Bo1g031900 Brassica oleracea Bo1g031900 I 0.708
ONIVA01G44610 Oryza nivara ONIVA01G44610 I 0.708
Pavir.Ab00058 Panicum virgatum Pavir.Ab00058 I 0.708
BGIOSGA004940 Oryza indica BGIOSGA004940 I 0.708
AGL3 Arabidopsis thaliana AT2G03710 D 0.708
O82698_MALDO Malus domestica O82698_MALDO D 0.708
Bo7g081460 Brassica oleracea Bo7g081460 I 0.708
MADS21 Oryza sativa OS01G0886200 I 0.708
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.708
ORUFI01G43090 Oryza rufipogon ORUFI01G43090 I 0.708
OBART10G16960 Oryza barthii OBART10G16960 I 0.708
GSMUA_Achr7G23690_001 Musa acuminata GSMUA_Achr7G23690_001 I 0.708
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.708
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.708
Pm004218 Prunus mume Pm004218 I 0.708
30147.m014133 Ricinus communis 30147.m014133 I 0.708
GSMUA_Achr2G06250_001 Musa acuminata GSMUA_Achr2G06250_001 I 0.708
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.708
LPERR01G34270 Leersia perrieri LPERR01G34270 I 0.708
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.708
TRIUR3_32699 Triticum urartu TRIUR3_32699 I 0.708
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.708
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I 0.708
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I 0.708
VIT_17s0000g01230 Vitis vinifera VIT_17s0000g01230 I 0.708
TCM_014051 Theobroma cacao TCM_014051 I 0.708
VIT_18s0001g04810 Vitis vinifera VIT_18s0001g04810 I 0.708
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.708
F775_29801 Aegilops tauschii F775_29801 I 0.708
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.708
Bostr.7867s0083 Boechera stricta Bostr.7867s0083 I 0.708
PRUPE_ppa011140mg Prunus persica PRUPE_ppa011140mg I 0.708
ORGLA01G0336500 Oryza glaberrima ORGLA01G0336500 I 0.708
Bostr.0556s0185 Boechera stricta Bostr.0556s0185 I 0.708
Traes_1DL_D5BBCA2D0 Triticum aestivum Traes_1DL_D5BBCA2D0 I 0.708
OGLUM01G43970 Oryza glumaepatula OGLUM01G43970 I 0.708
Carubv10017787m.g Capsella rubella Carubv10017787m.g I 0.708
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.708
Cagra.0447s0009 Capsella grandiflora Cagra.0447s0009 I 0.708
cassava38700.m1 Manihot esculenta cassava38700.m1 I 0.708
GRMZM2G018589 Zea mays GRMZM2G018589 I 0.708
OB01G48510 Oryza brachyantha OB01G48510 I 0.708
Solyc05g012020.2 Solanum lycopersicum Solyc05g012020.2 D 0.708
Solyc06g035570.1 Solanum lycopersicum Solyc06g035570.1 I 0.708
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.708
OB10G24040 Oryza brachyantha OB10G24040 I 0.708
Si002551m.g Setaria italica Si002551m.g I 0.708
Sb03g042080 Sorghum bicolor Sb03g042080 I 0.708
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.708
OBART01G39740 Oryza barthii OBART01G39740 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
H311_00382 Anncaliia algerae H311_00382 I 0.704
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700