Thhalv10019726m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10019726m.g T259160_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.739 0.739
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019726m MADS box 10 55

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.739
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.739
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.739
AGL65 Arabidopsis thaliana AT1G18750 D 0.708
AGL94 Arabidopsis thaliana AT1G69540 N 0.717
AGL30 Arabidopsis thaliana AT2G03060 I 0.717
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.708
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.739
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.761
Bo8g104060 Brassica oleracea Bo8g104060 I 0.739
Bo6g109050 Brassica oleracea Bo6g109050 I 0.717
Bo8g068060 Brassica oleracea Bo8g068060 I 0.739
Bra031049 Brassica rapa Bra031049 I 0.739
Bra004393 Brassica rapa Bra004393 I 0.717
Bra016544 Brassica rapa Bra016544 I 0.739
Bra025685 Brassica rapa Bra025685 I 0.717
PK03147.1 Cannabis sativa PK03147.1 I 0.739
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.739
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.783
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.739
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.739
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.783
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.739
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.717
Ca_16376 Cicer arietinum Ca_16376 I 0.717
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.739
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.739
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.891
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.739
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.717
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.739
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.739
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.702
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.717
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.739
MDP0000147667 Malus domestica MDP0000147667 I 0.717
MDP0000773068 Malus domestica MDP0000773068 I 0.733
MDP0000919323 Malus domestica MDP0000919323 I 0.733
MDP0000193129 Malus domestica MDP0000193129 I 0.717
MDP0000146415 Malus domestica MDP0000146415 I 0.733
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.717
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.739
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.717
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.739
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.717
Pm024895 Prunus mume Pm024895 I 0.717
Pm006479 Prunus mume Pm006479 I 0.739
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.717
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.739
29813.m001508 Ricinus communis 29813.m001508 I 0.761
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.739
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.739
TCM_011687 Theobroma cacao TCM_011687 I 0.739