CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10019839m.g
(
Eutrema salsugineum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Thhalv10019839m.g
T259168_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.833
0.833
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10019839m
MADS box
10
57
RLESSSNRKVTYSKRRSGILKKAKELSILCDIDIVLLMFSPSGRPTIF
Links
Other
MADS box
family TFs
Other
Eutrema salsugineum
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_014051
Theobroma cacao
TCM_014051
I
0.875
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.875
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.870
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.854
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.854
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.854
PK21701.1
Cannabis sativa
PK21701.1
I
0.854
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.854
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.854
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.854
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.854
Bra031049
Brassica rapa
Bra031049
I
0.854
30138.m004061
Ricinus communis
30138.m004061
I
0.854
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.854
Bra016544
Brassica rapa
Bra016544
I
0.854
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.848
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.848
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.848
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.848
Pm024895
Prunus mume
Pm024895
I
0.848
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.848
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.848
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.848
F775_13266
Aegilops tauschii
F775_13266
I
0.848
AGL65
Arabidopsis thaliana
AT1G18750
D
0.833
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.833
MDP0000193129
Malus domestica
MDP0000193129
I
0.833
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.833
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.833
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.833
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.833
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.833
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.833
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.830
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.830
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.826
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.812
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.809
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.809
Bra025685
Brassica rapa
Bra025685
I
0.809
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.804
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.804
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.804
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.804
Si028357m.g
Setaria italica
Si028357m.g
N
0.804
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.783
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.783
OBART11G21780
Oryza barthii
OBART11G21780
N
0.783
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.783
OS11G0658700
Oryza sativa
OS11G0658700
N
0.783
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.783
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.771
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.771
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.771
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.761
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.761
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.761
mgf000945m
Mimulus guttatus
mgf000945m
I
0.750
mgf004425m
Mimulus guttatus
mgf004425m
I
0.750
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.745
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.729
OMERI06G09450
Oryza meridionalis
OMERI06G09450
I
0.729
Cla018884
Citrullus lanatus
Cla018884
I
0.729
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.729
Cla010361
Citrullus lanatus
Cla010361
I
0.717
GSMUA_Achr11G14240_001
Musa acuminata
GSMUA_Achr11G14240_001
N
0.717
LPERR06G07270
Leersia perrieri
LPERR06G07270
I
0.708
OPUNC06G07570
Oryza punctata
OPUNC06G07570
I
0.708
OPUNC11G18320
Oryza punctata
OPUNC11G18320
N
0.708
OLONG_004474
Oryza longistaminata
OLONG_004474
I
0.708