Thhalv10019839m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10019839m.g T259168_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019839m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30138.m004061 Ricinus communis 30138.m004061 I 0.854
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.833
AGL65 Arabidopsis thaliana AT1G18750 D 0.833
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.833
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.761
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.804
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.761
Bo8g068060 Brassica oleracea Bo8g068060 I 0.854
Bo8g104060 Brassica oleracea Bo8g104060 I 0.854
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.833
Bra016544 Brassica rapa Bra016544 I 0.854
Bra025685 Brassica rapa Bra025685 I 0.809
Bra031049 Brassica rapa Bra031049 I 0.854
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.848
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.771
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.771
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.875
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.854
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.809
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.854
Cla010361 Citrullus lanatus Cla010361 I 0.717
Cla018884 Citrullus lanatus Cla018884 I 0.729
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.729
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.854
F775_13266 Aegilops tauschii F775_13266 I 0.848
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.833
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.826
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.833
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.833
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.783
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.717
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.745
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.771
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.708
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.783
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.854
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.833
MDP0000193129 Malus domestica MDP0000193129 I 0.833
mgf000945m Mimulus guttatus mgf000945m I 0.750
mgf004425m Mimulus guttatus mgf004425m I 0.750
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.870
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.812
OBART11G21780 Oryza barthii OBART11G21780 N 0.783
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.804
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.708
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.804
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.729
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.761
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.708
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.708
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.854
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.783
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.783
OS11G0658700 Oryza sativa OS11G0658700 N 0.783
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.830
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.830
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.804
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.809
PK21701.1 Cannabis sativa PK21701.1 I 0.854
Pm024895 Prunus mume Pm024895 I 0.848
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.848
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.848
Si028357m.g Setaria italica Si028357m.g N 0.804
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.729
TCM_014051 Theobroma cacao TCM_014051 I 0.875
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.854
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.848
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.848
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.848
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.848