PK03147.1 (Cannabis sativa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 PK03147.1 T259235_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK03147.1 MADS box 18 63

Links

Other MADS box family TFs
Other Cannabis sativa TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 1.000
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 1.000
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 1.000
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.978
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.978
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.978
TCM_011687 Theobroma cacao TCM_011687 I 0.957
Pm006479 Prunus mume Pm006479 I 0.957
MDP0000146231 Malus domestica MDP0000146231 I 0.957
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.957
MDP0000773068 Malus domestica MDP0000773068 I 0.956
MDP0000146415 Malus domestica MDP0000146415 I 0.956
MDP0000919323 Malus domestica MDP0000919323 I 0.956
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.935
29813.m001508 Ricinus communis 29813.m001508 I 0.935
Ca_16376 Cicer arietinum Ca_16376 I 0.935
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.935
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.935
MDP0000147667 Malus domestica MDP0000147667 I 0.935
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.915
Ca_18082 Cicer arietinum Ca_18082 I 0.913
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.913
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.913
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.891
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.891
Bo9g072860 Brassica oleracea Bo9g072860 N 0.891
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.891
Cla010361 Citrullus lanatus Cla010361 I 0.891
Bra017404 Brassica rapa Bra017404 I 0.870
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.870
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.870
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.870
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.870
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.870
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.870
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.848
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.848
AGL30 Arabidopsis thaliana AT2G03060 I 0.848
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.848
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.826
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.826
Bo7g080890 Brassica oleracea Bo7g080890 I 0.826
Bra024792 Brassica rapa Bra024792 I 0.826
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.826
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.804
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.804
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.804
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.787
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.787
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.786
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.783
Bo6g109050 Brassica oleracea Bo6g109050 I 0.783
AGL94 Arabidopsis thaliana AT1G69540 N 0.783
Bra004393 Brassica rapa Bra004393 I 0.783
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.783
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.761
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.761
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.761
F775_13266 Aegilops tauschii F775_13266 I 0.761
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.761
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.761
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.761
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.761
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.761
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.745
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.745
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.745
Bra025685 Brassica rapa Bra025685 I 0.745
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
Cla018884 Citrullus lanatus Cla018884 I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.739
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.739
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.729
Bra031049 Brassica rapa Bra031049 I 0.729
Bra016544 Brassica rapa Bra016544 I 0.729
Bo8g104060 Brassica oleracea Bo8g104060 I 0.729
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.729
Bo8g068060 Brassica oleracea Bo8g068060 I 0.729
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.717
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.717
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.717
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.717
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.708
TCM_014051 Theobroma cacao TCM_014051 I 0.708