PK21701.1 (Cannabis sativa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 PK21701.1 T259254_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK21701.1 MADS box 20 67

Links

Other MADS box family TFs
Other Cannabis sativa TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29813.m001508 Ricinus communis 29813.m001508 I 0.717
29908.m005982 Ricinus communis 29908.m005982 I 0.708
30138.m004061 Ricinus communis 30138.m004061 I 0.896
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.708
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.792
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.833
AGL65 Arabidopsis thaliana AT1G18750 D 0.812
AGL104 Arabidopsis thaliana AT1G22130 I 0.708
AGL66 Arabidopsis thaliana AT1G77980 I 0.729
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.729
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.739
Bo6g109050 Brassica oleracea Bo6g109050 I 0.739
Bo6g121640 Brassica oleracea Bo6g121640 I 0.729
Bo7g060150 Brassica oleracea Bo7g060150 I 0.708
Bo8g068060 Brassica oleracea Bo8g068060 I 0.833
Bo8g071330 Brassica oleracea Bo8g071330 I 0.708
Bo8g104060 Brassica oleracea Bo8g104060 I 0.833
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.729
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.812
Bra004393 Brassica rapa Bra004393 I 0.739
Bra012308 Brassica rapa Bra012308 I 0.708
Bra015643 Brassica rapa Bra015643 I 0.729
Bra016386 Brassica rapa Bra016386 I 0.708
Bra016544 Brassica rapa Bra016544 I 0.833
Bra025685 Brassica rapa Bra025685 I 0.833
Bra031049 Brassica rapa Bra031049 I 0.833
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.792
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.729
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.792
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.792
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.729
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.708
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.875
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.938
Ca_18082 Cicer arietinum Ca_18082 I 0.708
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.812
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.708
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.854
Cla010361 Citrullus lanatus Cla010361 I 0.750
Cla018884 Citrullus lanatus Cla018884 I 0.812
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.812
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.761
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.708
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.729
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.750
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.729
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.708
estExt_gwp_gw1.C_340302 Physcomitrella patens estExt_gwp_gw1.C_340302 I 0.729
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.729
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.833
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.708
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.708
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.729
F775_13266 Aegilops tauschii F775_13266 I 0.792
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.729
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.792
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.729
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.833
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.708
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.812
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.875
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.708
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.875
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.771
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.729
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.771
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.708
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.761
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.708
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.729
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.708
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.854
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.708
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.833
MDP0000146231 Malus domestica MDP0000146231 I 0.708
MDP0000147667 Malus domestica MDP0000147667 I 0.708
MDP0000193129 Malus domestica MDP0000193129 I 0.812
MDP0000243965 Malus domestica MDP0000243965 I 0.708
mgf000945m Mimulus guttatus mgf000945m I 0.750
mgf004425m Mimulus guttatus mgf004425m I 0.750
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.792
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.708
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.812
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.708
OB08G26170 Oryza brachyantha OB08G26170 I 0.708
OBART06G07860 Oryza barthii OBART06G07860 I 0.729
OBART11G21780 Oryza barthii OBART11G21780 N 0.729
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.729
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.750
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.708
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.750
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.708
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.729
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.708
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.854
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.708
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.729
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.729
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.708
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.729
OS06G0223300 Oryza sativa OS06G0223300 I 0.729
OS11G0658700 Oryza sativa OS11G0658700 N 0.729
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.812
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.812
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.792
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.833
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.729
Pm019181 Prunus mume Pm019181 I 0.708
Pm024895 Prunus mume Pm024895 I 0.792
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.771
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.708
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.792
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.812
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.729
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.729
Si028357m.g Setaria italica Si028357m.g N 0.771
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.771
TCM_001182 Theobroma cacao TCM_001182 I 0.708
TCM_014051 Theobroma cacao TCM_014051 I 0.875
TCM_034970 Theobroma cacao TCM_034970 I 0.708
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.833
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.729
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.854
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.792
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.792
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.792
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.792
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.854