CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK24279.1
(
Cannabis sativa
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
PK24279.1
T259257_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL67
M10907_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT1G77950_01
0.765
0.765
AGL42
M06995_2.00
Arabidopsis thaliana
RATGATG
CATCATY
Dap-seq
OMalley et al.(2016)
AGL42_col_a
0.706
0.706
AGL1
M02694_2.00
Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN
SELEX
Mathelier et al.(2014)
MA0585.1
0.706
0.706
AGL1
M10920_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_01
0.706
0.706
AGL1
M10921_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_02
0.706
0.706
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.706
0.706
Q9LM09_TOBAC
M11016_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS4_01
0.706
0.706
MADS5
M10970_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_02
0.706
0.706
SHP2
M10914_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SHP2_01
0.706
0.706
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK24279.1
MADS box
1
34
RRNGLIKKAYELSVLCDVDLALVMFSPSGRLSFF
Links
Other
MADS box
family TFs
Other
Cannabis sativa
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0002s09290
Populus trichocarpa
POPTR_0002s09290
I
0.882
OMERI06G09450
Oryza meridionalis
OMERI06G09450
I
0.882
GSMUA_Achr3G04450_001
Musa acuminata
GSMUA_Achr3G04450_001
I
0.882
SapurV1A.0010s0340
Salix purpurea
SapurV1A.0010s0340
I
0.882
Si013985m.g
Setaria italica
Si013985m.g
I
0.853
OMERI08G15140
Oryza meridionalis
OMERI08G15140
I
0.853
Sb10g007810
Sorghum bicolor
Sb10g007810
I
0.853
GRMZM2G334225
Zea mays
GRMZM2G334225
I
0.853
GRMZM2G152415
Zea mays
GRMZM2G152415
I
0.853
Pavir.Fb01739
Panicum virgatum
Pavir.Fb01739
I
0.853
F775_03584
Aegilops tauschii
F775_03584
I
0.824
TRIUR3_20588
Triticum urartu
TRIUR3_20588
I
0.824
Traes_4DS_A28BC582A
Triticum aestivum
Traes_4DS_A28BC582A
I
0.824
Cagra.0096s0039
Capsella grandiflora
Cagra.0096s0039
I
0.765
Carubv10021761m.g
Capsella rubella
Carubv10021761m.g
I
0.765
BRADI3G32090
Brachypodium distachyon
BRADI3G32090
I
0.735
TRIUR3_28280
Triticum urartu
TRIUR3_28280
I
0.706
Ca_25684
Cicer arietinum
Ca_25684
I
0.706
Pavir.J26790
Panicum virgatum
Pavir.J26790
I
0.706
Traes_5BL_4CA71C036
Triticum aestivum
Traes_5BL_4CA71C036
I
0.706
Ca_06280
Cicer arietinum
Ca_06280
I
0.706
Sb04g000500
Sorghum bicolor
Sb04g000500
I
0.706
GSMUA_Achr10G14160_001
Musa acuminata
GSMUA_Achr10G14160_001
I
0.706
GLYMA18G12590
Glycine max
GLYMA18G12590
I
0.706
GLYMA08G42300
Glycine max
GLYMA08G42300
I
0.706
BRADI3G41297
Brachypodium distachyon
BRADI3G41297
I
0.706
MLOC_64157
Hordeum vulgare
MLOC_64157
I
0.706
MTR_3g452380
Medicago truncatula
MTR_3g452380
I
0.706
Traes_5AL_01329A110
Triticum aestivum
Traes_5AL_01329A110
I
0.706
Si019985m.g
Setaria italica
Si019985m.g
I
0.706
MTR_7g075850
Medicago truncatula
MTR_7g075850
I
0.706
Traes_7BS_4D5DE99CC
Triticum aestivum
Traes_7BS_4D5DE99CC
I
0.700