PK24279.1 (Cannabis sativa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 PK24279.1 T259257_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL67
M10907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G77950_01 		0.765 0.765
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.706 0.706
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.706 0.706
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.706 0.706
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.706 0.706
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.706 0.706
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.706 0.706
MADS5
M10970_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_02 		0.706 0.706
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.706 0.706
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK24279.1 MADS box 1 34

Links

Other MADS box family TFs
Other Cannabis sativa TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.882
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.882
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.882
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.882
Si013985m.g Setaria italica Si013985m.g I 0.853
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.853
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.853
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.853
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.853
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.853
F775_03584 Aegilops tauschii F775_03584 I 0.824
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.824
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.824
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 0.765
Carubv10021761m.g Capsella rubella Carubv10021761m.g I 0.765
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.735
TRIUR3_28280 Triticum urartu TRIUR3_28280 I 0.706
Ca_25684 Cicer arietinum Ca_25684 I 0.706
Pavir.J26790 Panicum virgatum Pavir.J26790 I 0.706
Traes_5BL_4CA71C036 Triticum aestivum Traes_5BL_4CA71C036 I 0.706
Ca_06280 Cicer arietinum Ca_06280 I 0.706
Sb04g000500 Sorghum bicolor Sb04g000500 I 0.706
GSMUA_Achr10G14160_001 Musa acuminata GSMUA_Achr10G14160_001 I 0.706
GLYMA18G12590 Glycine max GLYMA18G12590 I 0.706
GLYMA08G42300 Glycine max GLYMA08G42300 I 0.706
BRADI3G41297 Brachypodium distachyon BRADI3G41297 I 0.706
MLOC_64157 Hordeum vulgare MLOC_64157 I 0.706
MTR_3g452380 Medicago truncatula MTR_3g452380 I 0.706
Traes_5AL_01329A110 Triticum aestivum Traes_5AL_01329A110 I 0.706
Si019985m.g Setaria italica Si019985m.g I 0.706
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.706
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I 0.700