PK26778.1 (Cannabis sativa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 PK26778.1 T259259_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.800 0.800
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.800 0.800
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.800 0.800
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.800 0.800
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.800 0.800
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.800 0.800
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.800 0.800
AGL13
M06989_2.00 		Arabidopsis thaliana
WTWCYHAAAAWRGWAADW
WHTTWCYWTTTTDRGWAW		 Dap-seq
OMalley et al.(2016)
AGL13_col_b 		0.750 0.750
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.750 0.750
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.750 0.750
AGL3
M02693_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 SELEX
Mathelier et al.(2014)
MA0001.2 		0.750 0.750
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.750 0.750
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.750 0.750
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.750 0.750
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.750 0.750
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.750 0.750
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.750 0.750
AGL3
M10908_2.00 		Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN
NNWNCYWWWWWTGGNWHB		 Transfac
Matys et al.(2006)
P$AGL3_01 		0.750 0.750
AGL3
M10909_2.00 		Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN
NNWDCYAWWWWTGGNAHN		 Transfac
Matys et al.(2006)
P$AGL3_02 		0.750 0.750
AGL3
M10910_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL3_03 		0.750 0.750
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.750 0.750
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.750 0.750
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.750 0.750
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.750 0.750
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.750 0.750
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.750 0.750
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.750 0.750
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.750 0.750
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.750 0.750
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.750 0.750
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.750 0.750
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.750 0.750
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.750 0.750
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.750 0.750
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.750 0.750
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.750 0.750
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.750 0.750
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.750 0.750
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.700 0.700
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.700 0.700
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.700 0.700
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.700 0.700
Q9LEH9_HORVU
M10983_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM9_01 		0.700 0.700
Q9ATF2_PETHY
M11014_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP5_01 		0.700 0.700
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.700 0.700
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.700 0.700
MADS26
M10974_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS26_01 		0.700 0.700
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.700 0.700
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK26778.1 MADS box 1 20

Links

Other MADS box family TFs
Other Cannabis sativa TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0129s0120 Salix purpurea SapurV1A.0129s0120 I 0.900
SapurV1A.0129s0140 Salix purpurea SapurV1A.0129s0140 I 0.900
SapurV1A.0129s0130 Salix purpurea SapurV1A.0129s0130 I 0.900
POPTR_0012s14770 Populus trichocarpa POPTR_0012s14770 I 0.900
evm.TU.supercontig_660.1 Carica papaya evm.TU.supercontig_660.1 I 0.850
mgf019667m Mimulus guttatus mgf019667m I 0.800
Bostr.10199s0104 Boechera stricta Bostr.10199s0104 I 0.800
PGSC0003DMG400028359 Solanum tuberosum PGSC0003DMG400028359 I 0.800
OBART01G40880 Oryza barthii OBART01G40880 I 0.800
FBP24_PETHY Petunia x hybrida FBP24_PETHY D 0.800
TT16 Vitis vinifera VIT_01s0011g01560 I 0.800
OS01G0903800 Oryza sativa OS01G0903800 I 0.800
Carubv10002792m.g Capsella rubella Carubv10002792m.g I 0.800
Solyc02g091550.1 Solanum lycopersicum Solyc02g091550.1 I 0.800
VIT_00s0211g00150 Vitis vinifera VIT_00s0211g00150 I 0.800
Cagra.4348s0011 Capsella grandiflora Cagra.4348s0011 I 0.800
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.800
TT16 Arabidopsis thaliana AT5G23260 I 0.800
SapurV1A.1446s0020 Salix purpurea SapurV1A.1446s0020 I 0.750
VIT_15s0048g01240 Vitis vinifera VIT_15s0048g01240 I 0.750
Ca_06280 Cicer arietinum Ca_06280 I 0.750
Ca_13221 Cicer arietinum Ca_13221 I 0.750
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.750
Solyc12g038510.1 Solanum lycopersicum Solyc12g038510.1 I 0.750
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.750
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.750
Si014419m.g Setaria italica Si014419m.g I 0.750
Cla014307 Citrullus lanatus Cla014307 I 0.750
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.750
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.750
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.750
Cagra.4003s0006 Capsella grandiflora Cagra.4003s0006 I 0.750
Eucgr.D01939 Eucalyptus grandis Eucgr.D01939 I 0.750
Carubv10027142m.g Capsella rubella Carubv10027142m.g I 0.750
Eucgr.B03516 Eucalyptus grandis Eucgr.B03516 I 0.750
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.750
Lus10014143.g Linum usitatissimum Lus10014143.g I 0.750
Q9ATE9_PETHY Petunia x hybrida Q9ATE9_PETHY D 0.750
cassava44571.m1 Manihot esculenta cassava44571.m1 I 0.750
Cucsa.103820 Cucumis sativus Cucsa.103820 I 0.750
MDP0000205637 Malus domestica MDP0000205637 I 0.750
Eucgr.C01942 Eucalyptus grandis Eucgr.C01942 I 0.750
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.750
OLONG_005831 Oryza longistaminata OLONG_005831 I 0.750
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.750
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.750
Bo4g195720 Brassica oleracea Bo4g195720 I 0.750
OLONG_014832 Oryza longistaminata OLONG_014832 I 0.750
LPERR07G18670 Leersia perrieri LPERR07G18670 I 0.750
Gorai.008G115200 Gossypium raimondii Gorai.008G115200 I 0.700
Gorai.007G009800 Gossypium raimondii Gorai.007G009800 I 0.700
Gorai.004G132000 Gossypium raimondii Gorai.004G132000 I 0.700
Bra038511 Brassica rapa Bra038511 I 0.700
Gorai.012G134200 Gossypium raimondii Gorai.012G134200 I 0.700
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.700
Bra025126 Brassica rapa Bra025126 I 0.700
Lus10007100.g Linum usitatissimum Lus10007100.g I 0.700
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.700
gene26429-v1.0-hybrid Fragaria vesca gene26429-v1.0-hybrid I 0.700
GRMZM2G044408 Zea mays GRMZM2G044408 I 0.700
GSMUA_Achr11G02790_001 Musa acuminata GSMUA_Achr11G02790_001 I 0.700
Eucgr.B00633 Eucalyptus grandis Eucgr.B00633 I 0.700
GLYMA18G50910 Glycine max GLYMA18G50910 I 0.700
Eucgr.E00516 Eucalyptus grandis Eucgr.E00516 I 0.700
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.700
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.700
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.700
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.700
Bra020826 Brassica rapa Bra020826 I 0.700
SapurV1A.4216s0020 Salix purpurea SapurV1A.4216s0020 I 0.700
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.700
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.700
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.700
BGIOSGA026097 Oryza indica BGIOSGA026097 I 0.700
SVP Arabidopsis thaliana AT2G22540 D 0.700
chr1.CM0163.120.nc Lotus japonicus chr1.CM0163.120.nc I 0.700
PK20651.1 Cannabis sativa PK20651.1 I 0.700
SapurV1A.0881s0020 Salix purpurea SapurV1A.0881s0020 I 0.700
SapurV1A.0400s0280 Salix purpurea SapurV1A.0400s0280 I 0.700
Bo8g101000 Brassica oleracea Bo8g101000 I 0.700
Pavir.J26790 Panicum virgatum Pavir.J26790 I 0.700
MDP0000209705 Malus domestica MDP0000209705 I 0.700
Bo7g098670 Brassica oleracea Bo7g098670 I 0.700
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.700
SapurV1A.0176s0490 Salix purpurea SapurV1A.0176s0490 I 0.700
Bo3g165710 Brassica oleracea Bo3g165710 I 0.700
POPTR_0008s09780 Populus trichocarpa POPTR_0008s09780 I 0.700
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.700
AMTR_s00001p00218870 Amborella trichopoda AMTR_s00001p00218870 I 0.700
TT16 Vitis vinifera VIT_10s0042g00820 I 0.700
ONIVA07G20220 Oryza nivara ONIVA07G20220 I 0.700
OMERI07G17960 Oryza meridionalis OMERI07G17960 I 0.700
PRUPE_ppa010679mg Prunus persica PRUPE_ppa010679mg I 0.700
Cla014322 Citrullus lanatus Cla014322 I 0.700
POPTR_0015s14010 Populus trichocarpa POPTR_0015s14010 I 0.700
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.700
SVP Vitis vinifera VIT_00s0313g00070 I 0.700
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.700
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.700
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.700
ORUFI07G22480 Oryza rufipogon ORUFI07G22480 I 0.700
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.700
Si030960m.g Setaria italica Si030960m.g I 0.700
TCM_015044 Theobroma cacao TCM_015044 I 0.700
OPUNC07G20110 Oryza punctata OPUNC07G20110 I 0.700
ORGLA07G0222800 Oryza glaberrima ORGLA07G0222800 I 0.700
Pm007034 Prunus mume Pm007034 I 0.700
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.700
MTR_1g038300 Medicago truncatula MTR_1g038300 I 0.700
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.700
mgf021543m Mimulus guttatus mgf021543m I 0.700
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.700
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.700
GSMUA_Achr3G07310_001 Musa acuminata GSMUA_Achr3G07310_001 I 0.700
GSMUA_Achr9G29320_001 Musa acuminata GSMUA_Achr9G29320_001 I 0.700
MADS26 Oryza sativa OS08G0112700 D 0.700
MADS18 Oryza sativa OS07G0605200 D 0.700
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.700
OBART08G00930 Oryza barthii OBART08G00930 I 0.700
Q9ATF2_PETHY Petunia x hybrida Q9ATF2_PETHY D 0.700
OGLUM07G21410 Oryza glumaepatula OGLUM07G21410 I 0.700
OBART07G21550 Oryza barthii OBART07G21550 I 0.700
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.700
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.700
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.700
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.700