CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Scas_Contig709.27
(
Saccharomyces castellii
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Scas_Contig709.27
T259274_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARG80
M08426_2.00
Saccharomyces cerevisiae
WGACDC
GHGTCW
ChIP-chip
Mathelier et al.(2014)
MA0271.1
0.917
0.917
ARG80
M08588_2.00
Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR
YTDYCNHVBNVGBHNN
Misc
DeBoer et al.(2011)
YMR042W_1483
0.917
0.917
ARG80
M10989_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ARGRI_01
0.917
0.917
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.792
0.792
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.792
0.792
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.792
0.792
MCM1
M10991_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.792
0.792
MCM1
M10992_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.792
0.792
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.792
0.792
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig709.27
MADS box
127
174
YIENKTRRHVTFAKRRHGIMKKAYELSVLTGANVLLLILSGSGLVYTF
Links
Other
MADS box
family TFs
Other
Saccharomyces castellii
TFs
249 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy