SNAPOd2T00012736001 (Oikopleura dioica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 SNAPOd2T00012736001 T259285_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.708 0.708
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00012736001 MADS box 67 114

Links

Other MADS box family TFs
Other Oikopleura dioica TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MESCA001358 Megaselia scalaris MESCA001358 I 0.815
TELCIR_12851 Teladorsagia circumcincta TELCIR_12851 I 0.815
Hba_21368 Heterorhabditis bacteriophora Hba_21368 I 0.786
TELCIR_03792 Teladorsagia circumcincta TELCIR_03792 I 0.786
ACHR000964 Anopheles christyi ACHR000964 I 0.778
ADIR000346 Anopheles dirus ADIR000346 I 0.778
AFUN006147 Anopheles funestus AFUN006147 I 0.778
SINV23954 Solenopsis invicta SINV23954 I 0.778
ADAC008363 Anopheles darlingi ADAC008363 I 0.778
ASTEI07120 Anopheles stephensi ASTEI07120 I 0.778
ASIS007770 Anopheles sinensis ASIS007770 I 0.778
Brh_R011000 Buceros rhinoceros Brh_R011000 I 0.769
SRF Vicugna pacos ENSVPAG00000008912 I 0.769
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 0.769
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 0.769
SRF Gorilla gorilla ENSGGOG00000006293 I 0.769
LCUP011663 Lucilia cuprina LCUP011663 I 0.759
AATE011966 Anopheles atroparvus AATE011966 I 0.759
AARA006325 Anopheles arabiensis AARA006325 I 0.750
srf Ciona intestinalis ENSCING00000018042 I 0.750
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.750
CLEC013390 Cimex lectularius CLEC013390 I 0.750
HelroG137972 Helobdella robusta HelroG137972 I 0.750
MCINX015635 Melitaea cinxia MCINX015635 I 0.750
tetur02g05030 Tetranychus urticae tetur02g05030 I 0.750
Gfo_R009695 Geospiza fortis Gfo_R009695 I 0.741
Afo_R000461 Aptenodytes forsteri Afo_R000461 I 0.741
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I 0.741
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I 0.741
SRF Cavia porcellus ENSCPOG00000022327 I 0.741
SRF Loxodonta africana ENSLAFG00000010278 I 0.741
Aan_R005414 Calypte anna Aan_R005414 I 0.741
SRF Taeniopygia guttata ENSTGUG00000004738 I 0.741
SRF Erinaceus europaeus ENSEEUG00000005614 I 0.731
ANCCAN_16750 Ancylostoma caninum ANCCAN_16750 I 0.729
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I 0.729
NEMVEDRAFT_v1g164599 Nematostella vectensis NEMVEDRAFT_v1g164599 I 0.729
BGLB003854 Biomphalaria glabrata BGLB003854 I 0.729
ACAC_0000939001 Angiostrongylus cantonensis ACAC_0000939001 I 0.729
SMAR003014 Strigamia maritima SMAR003014 I 0.729
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.729
ML154140a Mnemiopsis leidyi ML154140a I 0.729
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.729
XP_002156545.1 Hydra magnipapillata XP_002156545.1 I 0.729
Ocbimv22020285m.g Octopus bimaculoides Ocbimv22020285m.g I 0.729
ISCW019966 Ixodes scapularis ISCW019966 I 0.729
TriadG59812 Trichoplax adhaerens TriadG59812 I 0.729
LotgiG59850 Lottia gigantea LotgiG59850 I 0.729
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.729
XP_002164692.1 Hydra magnipapillata XP_002164692.1 I 0.729
ACOC_0000094701 Angiostrongylus costaricensis ACOC_0000094701 I 0.729
ANCCEY_11374 Ancylostoma ceylanicum ANCCEY_11374 I 0.729
OESDEN_12192 Oesophagostomum dentatum OESDEN_12192 I 0.729
NECAME_15797 Necator americanus NECAME_15797 I 0.729
NBR_0001475101 Nippostrongylus brasiliensis NBR_0001475101 I 0.729
HPBE_0000920601 Heligmosomoides bakeri HPBE_0000920601 I 0.729
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.729
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.729
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.729
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.729
Aqu1.224560 Amphimedon queenslandica Aqu1.224560 I 0.729
CapteG221100 Capitella teleta CapteG221100 I 0.729
CGI_10019446 Crassostrea gigas CGI_10019446 I 0.729
HCOI01934200 Haemonchus contortus HCOI01934200 I 0.729
EFV60876 Trichinella spiralis EFV60876 I 0.729
DICVIV_07203 Dictyocaulus viviparus DICVIV_07203 I 0.729
D917_02561 Trichinella nativa D917_02561 I 0.729
D918_07967 Trichuris suis D918_07967 I 0.729
ANCCEY_13649 Ancylostoma ceylanicum ANCCEY_13649 I 0.729
BGIBMGA001384 Bombyx mori BGIBMGA001384 I 0.724
HHAL001485-PA Halyomorpha halys HHAL001485-PA I 0.724
O9G_005180 Rozella allomycis O9G_005180 I 0.714
Myotis_brandtii_SRF_10026135 Myotis brandtii Myotis_brandtii_SRF_10026135 I 0.710
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I 0.708
unc-120 Caenorhabditis elegans WBGene00006844 D 0.708
BTMF_0000835601 Brugia timori BTMF_0000835601 I 0.708
WBGene00243571 Onchocerca volvulus WBGene00243571 I 0.708
ASU_14961 Ascaris suum ASU_14961 I 0.708
SVE_1017000 Strongyloides venezuelensis SVE_1017000 I 0.708
TC004911 Tribolium castaneum TC004911 I 0.708
MDOA002443 Musca domestica MDOA002443 I 0.708
ASIM_0002132201 Anisakis simplex ASIM_0002132201 I 0.708
TCLT_0000849901 Thelazia callipaeda TCLT_0000849901 I 0.708
SSTP_0000932200 Strongyloides stercoralis SSTP_0000932200 I 0.708
ASU_11865 Ascaris suum ASU_11865 I 0.708
SPAL_0000748100 Strongyloides papillosus SPAL_0000748100 I 0.708
ENSBTAP00000016981-D1 Bos grunniens ENSBTAP00000016981-D1 I 0.708
EEL_0000867301 Elaeophora elaphi EEL_0000867301 I 0.708
nDi.2.2.2.g03920 Dirofilaria immitis nDi.2.2.2.g03920 I 0.708
DME_0000010001 Dracunculus medinensis DME_0000010001 I 0.708
EFA85834.1 Polysphondylium pallidum EFA85834.1 I 0.708
nAv.1.0.1.g08666 Acanthocheilonema viteae nAv.1.0.1.g08666 I 0.708
srf Xenopus tropicalis XB-GENE-482036 I 0.708
GPUH_0001673101 Gongylonema pulchrum GPUH_0001673101 I 0.708
nLs.2.1.2.g09548 Litomosoides sigmodontis nLs.2.1.2.g09548 I 0.708
nOo.2.0.1.g11137 Onchocerca ochengi nOo.2.0.1.g11137 I 0.708
srf.L Xenopus laevis XB-GENE-864819 I 0.708
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.708
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.708
Pvit_03053 Pogona vitticeps Pvit_03053 I 0.708
estExt_fgeneshNG_pg.C_520029 Naegleria gruberi estExt_fgeneshNG_pg.C_520029 I 0.708
estExt_fgeneshDP_kg.C_1450001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_1450001 I 0.708
PTRK_0001139200 Parastrongyloides trichosuri PTRK_0001139200 I 0.708
GB47234 Apis mellifera GB47234 I 0.708
SRF Felis catus ENSFCAG00000025180 I 0.708
SRF Homo sapiens ENSG00000112658 D 0.708
SRF Gasterosteus aculeatus ENSGACG00000003778 I 0.708
SRF Equus caballus ENSECAG00000009068 I 0.708
SRF Dasypus novemcinctus ENSDNOG00000014133 I 0.708
ENSCSAG00000011622 Chlorocebus sabaeus ENSCSAG00000011622 I 0.708
srfa Danio rerio ENSDARG00000053918 I 0.708
srfb Danio rerio ENSDARG00000102867 I 0.708
srfa Gasterosteus aculeatus ENSGACG00000020002 I 0.708
ENSGMOG00000008883 Gadus morhua ENSGMOG00000008883 I 0.708
SRF Monodelphis domestica ENSMODG00000018981 I 0.708
ENSMPUG00000013090 Mustela putorius furo ENSMPUG00000013090 I 0.708
Srf Mus musculus ENSMUSG00000015605 D 0.708
SRF Macaca mulatta ENSMMUG00000000033 I 0.708
ENSMICG00000008327 Microcebus murinus ENSMICG00000008327 I 0.708
ENSLACG00000014404 Latimeria chalumnae ENSLACG00000014404 I 0.708
ENSLOCG00000015887 Lepisosteus oculatus ENSLOCG00000015887 I 0.708
SRF Callithrix jacchus ENSCJAG00000005223 I 0.708
SRF Canis familiaris ENSCAFG00000001829 I 0.708
CBG12542 Caenorhabditis briggsae CBG12542 I 0.708
CBN00046 Caenorhabditis brenneri CBN00046 I 0.708
CBN02826 Caenorhabditis brenneri CBN02826 I 0.708
Bm7708 Brugia malayi Bm7708 I 0.708
Bm3022 Brugia malayi Bm3022 I 0.708
WUBG_06152 Wuchereria bancrofti WUBG_06152 I 0.708
ACEP12187 Atta cephalotes ACEP12187 I 0.708
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.708
CJA08385 Caenorhabditis japonica CJA08385 I 0.708
CRE29464 Caenorhabditis remanei CRE29464 I 0.708
ENSAMXG00000001100 Astyanax mexicanus ENSAMXG00000001100 I 0.708
ENSAMXG00000003129 Astyanax mexicanus ENSAMXG00000003129 I 0.708
SRF Bos taurus ENSBTAG00000012777 I 0.708
ENSAMEG00000012452 Ailuropoda melanoleuca ENSAMEG00000012452 I 0.708
SRF Anolis carolinensis ENSACAG00000004798 I 0.708
srfA Dictyostelium discoideum DDB_G0281387 D 0.708
srfB Dictyostelium discoideum DDB_G0282835 I 0.708
ENSNLEG00000004203 Nomascus leucogenys ENSNLEG00000004203 I 0.708
SRF Oryctolagus cuniculus ENSOCUG00000002892 I 0.708
GH20989 Drosophila grimshawi FBgn0128451 I 0.708
GI21322 Drosophila mojavensis FBgn0144052 I 0.708
GL20046 Drosophila persimilis FBgn0157643 I 0.708
GG22961 Drosophila erecta FBgn0115118 I 0.708
GF11392 Drosophila ananassae FBgn0088432 I 0.708
ENSXMAG00000006964 Xiphophorus maculatus ENSXMAG00000006964 I 0.708
bs Drosophila melanogaster FBgn0004101 D 0.708
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.708
GM11854 Drosophila sechellia FBgn0166795 I 0.708
GD11852 Drosophila simulans FBgn0183591 I 0.708
L798_08800 Zootermopsis nevadensis L798_08800 I 0.708
LOAG_01601 Loa loa LOAG_01601 I 0.708
NV18787 Nasonia vitripennis NV18787 I 0.708
CAOG_01457 Capsaspora owczarzaki CAOG_01457 I 0.708
GE14398 Drosophila yakuba FBgn0232006 I 0.708
GJ21595 Drosophila virilis FBgn0208714 I 0.708
GK22205 Drosophila willistoni FBgn0224190 I 0.708
SRF Tursiops truncatus ENSTTRG00000007017 I 0.708
SRF Takifugu rubripes ENSTRUG00000017531 I 0.708
ENSPANG00000006410 Papio anubis ENSPANG00000006410 I 0.708
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.708
ENSPFOG00000022718 Poecilia formosa ENSPFOG00000022718 I 0.708
SRF Oryzias latipes ENSORLG00000013036 I 0.708
ENSONIG00000010505 Oreochromis niloticus ENSONIG00000010505 I 0.708
Ppa-unc-120 Pristionchus pacificus PPA14131 I 0.708
SRF Otolemur garnettii ENSOGAG00000029623 I 0.708
ENSONIG00000010161 Oreochromis niloticus ENSONIG00000010161 I 0.708
ENSPPYG00000016633 Pongo abelii ENSPPYG00000016633 I 0.708
SRF Pan troglodytes ENSPTRG00000018189 I 0.708
srfa Tetraodon nigroviridis ENSTNIG00000002923 I 0.708
SRF Tetraodon nigroviridis ENSTNIG00000013420 I 0.708
srfa Takifugu rubripes ENSTRUG00000011448 I 0.708
ENSSTOG00000014222 Ictidomys tridecemlineatus ENSSTOG00000014222 I 0.708
SRF Sus scrofa ENSSSCG00000001661 I 0.708
SRF Pteropus vampyrus ENSPVAG00000008728 I 0.708
Srf Rattus norvegicus ENSRNOG00000018232 I 0.708
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.700
LLOJ005985 Lutzomyia longipalpis LLOJ005985 I 0.700