mef2d.S (Xenopus laevis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 XB-GENE-6254040 T259292_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MEF2D
M03343_2.00
Homo sapiens
DCTAWAAATAGM

KCTATTTWTAGH
SELEX
Jolma et al.(2013)
MEF2D_1
1.000 1.000
MEF2D
M05555_2.00
Homo sapiens
CYWWATWWGG

CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2D_eDBD_HT-SELEX
1.000 1.000
MEF2D
M09250_2.00
Homo sapiens
CTAWAAATAGMH

DKCTATTTWTAG
Misc
Kulakovskiy et al.(2013)
MEF2D_HUMAN.H11MO.0.A
1.000 1.000
Mef2d
M09252_2.00
Mus musculus
DDCTAWAAATAGMH

DKCTATTTWTAGHH
Misc
Kulakovskiy et al.(2013)
MEF2D_MOUSE.H11MO.0.A
1.000 1.000
MEF2D
M10957_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2D_Q4
1.000 1.000
MEF2D
M05556_2.00
Homo sapiens
CYWWATWWGG

CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2D_eDBD_Methyl-HT-SELEX
1.000 1.000
MEF2A
M03340_2.00
Homo sapiens
KCTAWAAATAGM

KCTATTTWTAGM
SELEX
Jolma et al.(2013)
MEF2A_1
0.958 0.958
MEF2A
M07979_2.00
Homo sapiens
NDDHYAAAAATARHH

DDYTATTTTTRDHHN
ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2A_HudsonAlpha
0.958 0.958
MEF2A
M08212_2.00
Homo sapiens
CTAWWWWTAG

CTAWWWWTAG
ChIP-seq
Contrino et al.(2012)
Mv88
0.958 0.958
MEF2A
M08213_2.00
Homo sapiens
AAAATAGM

KCTATTTT
ChIP-seq
Contrino et al.(2012)
Mv90
0.958 0.958
MEF2A
M09247_2.00
Homo sapiens
DYYAAAAATAGMH

DKCTATTTTTRRH
Misc
Kulakovskiy et al.(2013)
MEF2A_HUMAN.H11MO.0.A
0.958 0.958
Mef2a
M09255_2.00
Mus musculus
DDCYAWAAATARMH

DKYTATTTWTRGHH
Misc
Kulakovskiy et al.(2013)
MEF2A_MOUSE.H11MO.0.A
0.958 0.958
Mef2a
M09599_2.00
Mus musculus
CYNDAAATAG

CTATTTHNRG
Misc
Heinz et al.(2010)
HL1-Mef2a.biotin_GSE21529
0.958 0.958
MEF2A
M10933_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AMEF2_Q6
0.958 0.958
MEF2A
M10934_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HMEF2_Q6
0.958 0.958
MEF2A
M10935_2.00
Homo sapiens
BTCTAAAAATAACYCY

RGRGTTATTTTTAGAV
Transfac
Matys et al.(2006)
V$MEF2_01
0.958 0.958
MEF2A
M10936_2.00
Homo sapiens
BNNNDDDCTAWAAATAGMHNNN

NNNDKCTATTTWTAGHHHNNNV
Transfac
Matys et al.(2006)
V$MEF2_02
0.958 0.958
MEF2A
M10937_2.00
Homo sapiens
NNNNDWKCTAWAAATAGMHHNN

NNDDKCTATTTWTAGMWHNNNN
Transfac
Matys et al.(2006)
V$MEF2_03
0.958 0.958
MEF2A
M10938_2.00
Homo sapiens
NVTGTTRCTAWAAATAGAAHHN

NDDWTCTATTTWTAGYAACABN
Transfac
Matys et al.(2006)
V$MEF2_04
0.958 0.958
MEF2A
M10939_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2A_05
0.958 0.958
MEF2A
M10940_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2A_Q6
0.958 0.958
MEF2A
M10941_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2_Q6_02
0.958 0.958
MEF2A
M10942_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MMEF2_Q6
0.958 0.958
MEF2A
M10943_2.00
Homo sapiens
NDKCTAWAAATAGMHH

DDKCTATTTWTAGMHN
Transfac
Matys et al.(2006)
V$RSRFC4_01
0.958 0.958
MEF2A
M10944_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RSRFC4_Q2
0.958 0.958
MEF2C
M02745_2.00
Homo sapiens
TWCTAWAAATAG

CTATTTWTAGWA
SELEX
Jolma et al.(2010)
MEF2C_dimer
0.938 0.938
MEF2C
M05551_2.00
Homo sapiens
CYWWATWWGG

CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2C_FL_HT-SELEX
0.938 0.938
MEF2C
M08149_2.00
Homo sapiens
NDDMYAAAAATAGMH

DKCTATTTTTRKHHN
ChIP-seq
Mathelier et al.(2014)
MA0497.1
0.938 0.938
MEF2C
M07980_2.00
Homo sapiens
NDDYYAAAAATAGHH

DDCTATTTTTRRHHN
ChIP-seq
Gerstein et al.(2012)
GM12878_MEF2C_HudsonAlpha
0.938 0.938
MEF2C
M09248_2.00
Homo sapiens
DYYAAAAATARMH

DKYTATTTTTRRH
Misc
Kulakovskiy et al.(2013)
MEF2C_HUMAN.H11MO.0.A
0.938 0.938
Mef2c
M09253_2.00
Mus musculus
DDMYAAAAATAGMHN

NDKCTATTTTTRKHH
Misc
Kulakovskiy et al.(2013)
MEF2C_MOUSE.H11MO.0.A
0.938 0.938
MEF2C
M09597_2.00
Homo sapiens
DHYWDAAATARM

KYTATTTHWRDH
Misc
Heinz et al.(2010)
GM12878-Mef2c_GSE32465
0.938 0.938
MEF2C
M10945_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2C_02
0.938 0.938
MEF2C
M10946_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2C_Q4
0.938 0.938
MEF2C
M05552_2.00
Homo sapiens
CYWWATWWGG

CCWWATWWRG
SELEX
Yin et al.(2017)
MEF2C_FL_Methyl-HT-SELEX
0.938 0.938
MEF2B
M03344_2.00
Homo sapiens
RCTAWAAATAGM

KCTATTTWTAGY
SELEX
Jolma et al.(2013)
MEF2B_1
0.896 0.896
MEF2B
M05557_2.00
Homo sapiens
CYNDWWWHGG

CCDWWWHNRG
SELEX
Yin et al.(2017)
MEF2B_eDBD_HT-SELEX
0.896 0.896
MEF2B
M05559_2.00
Homo sapiens
CCVDWTATGGTAACA

TGTTACCATAWHBGG
SELEX
Yin et al.(2017)
MEF2B_FL_HT-SELEX
0.896 0.896
Mef2
M08214_2.00
Drosophila melanogaster
YTAWWWWTAR

YTAWWWWTAR
ChIP-seq
Contrino et al.(2012)
Mf26
0.896 0.896
MEF2B
M09251_2.00
Homo sapiens
CYWAAAATAGHHHH

DDDDCTATTTTWRG
Misc
Kulakovskiy et al.(2013)
MEF2B_HUMAN.H11MO.0.A
0.896 0.896
MEF2B
M05558_2.00
Homo sapiens
CYWWWWWNGG

CCNWWWWWRG
SELEX
Yin et al.(2017)
MEF2B_eDBD_Methyl-HT-SELEX
0.896 0.896
MEF2B
M05560_2.00
Homo sapiens
CCVDATATGGTAACR

YGTTACCATATHBGG
SELEX
Yin et al.(2017)
MEF2B_FL_Methyl-HT-SELEX
0.896 0.896
Mef2b
M10958_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MEF2B_02
0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI69908 MADS box 10 57
AAI69938 MADS box 10 57
CAA79531 MADS box 10 57

Links

Other MADS box family TFs
Other Xenopus laevis TFs

489 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_43744 Aegilops tauschii F775_43744 N 0.000
AMTR_s00049p00034730 Amborella trichopoda AMTR_s00049p00034730 N 0.000
Aquca_108_00003 Aquilegia coerulea Aquca_108_00003 N 0.000
ABI3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3002399 N 0.000
ABI3 Arabidopsis thaliana AT3G24650 N 0.000
Bostr.19424s0154 Boechera stricta Bostr.19424s0154 N 0.000
BRADI2G58390 Brachypodium distachyon BRADI2G58390 N 0.000
Bo3g083650 Brassica oleracea Bo3g083650 N 0.000
Bra013248 Brassica rapa Bra013248 N 0.000
Cagra.2774s0002 Capsella grandiflora Cagra.2774s0002 N 0.000
Carubv10016094m.g Capsella rubella Carubv10016094m.g N 0.000
evm.TU.supercontig_8.187 Carica papaya evm.TU.supercontig_8.187 N 0.000
Ca_21518 Cicer arietinum Ca_21518 N 0.000
Cla015213 Citrullus lanatus Cla015213 N 0.000
Ciclev10019039m.g Citrus clementina Ciclev10019039m.g N 0.000
orange1.1g038867m.g Citrus sinensis orange1.1g038867m.g N 0.000
Cucsa.078480 Cucumis sativus Cucsa.078480 N 0.000
Eucgr.H00815 Eucalyptus grandis Eucgr.H00815 N 0.000
Thhalv10003110m.g Eutrema salsugineum Thhalv10003110m.g N 0.000
gene17562-v1.0-hybrid Fragaria vesca gene17562-v1.0-hybrid N 0.000
GLYMA18G38490 Glycine max GLYMA18G38490 N 0.000
GLYMA08G47240 Glycine max GLYMA08G47240 N 0.000
Gorai.001G184300 Gossypium raimondii Gorai.001G184300 N 0.000
MLOC_69727 Hordeum vulgare MLOC_69727 N 0.000
LPERR01G35880 Leersia perrieri LPERR01G35880 N 0.000
Lus10011888.g Linum usitatissimum Lus10011888.g N 0.000
Lus10022820.g Linum usitatissimum Lus10022820.g N 0.000
chr1.CM0147.220.nd Lotus japonicus chr1.CM0147.220.nd N 0.000
MDP0000309680 Malus domestica MDP0000309680 N 0.000
MDP0000166580 Malus domestica MDP0000166580 N 0.000
cassava34238.m1 Manihot esculenta cassava34238.m1 N 0.000
cassava2971.m1 Manihot esculenta cassava2971.m1 N 0.000
MTR_7g059330 Medicago truncatula MTR_7g059330 N 0.000
mgf023017m Mimulus guttatus mgf023017m N 0.000
GSMUA_Achr7G23040_001 Musa acuminata GSMUA_Achr7G23040_001 N 0.000
GSMUA_AchrUn_randomG18520_001 Musa acuminata GSMUA_AchrUn_randomG18520_001 N 0.000
OBART01G41410 Oryza barthii OBART01G41410 N 0.000
OB01G50120 Oryza brachyantha OB01G50120 N 0.000
ORGLA01G0353400 Oryza glaberrima ORGLA01G0353400 N 0.000
OGLUM01G45580 Oryza glumaepatula OGLUM01G45580 N 0.000
BGIOSGA000276 Oryza indica BGIOSGA000276 N 0.000
OLONG_001180 Oryza longistaminata OLONG_001180 N 0.000
OMERI01G38380 Oryza meridionalis OMERI01G38380 N 0.000
ONIVA01G46510 Oryza nivara ONIVA01G46510 N 0.000
ORUFI01G44750 Oryza rufipogon ORUFI01G44750 N 0.000
VP1 Oryza sativa OS01G0911700 N 0.000
Pavir.Ea03476 Panicum virgatum Pavir.Ea03476 N 0.000
Pavir.J03563 Panicum virgatum Pavir.J03563 N 0.000
PDK_20s1318001g001 Phoenix dactylifera PDK_20s1318001g001 N 0.000
POPTR_0002s25330 Populus trichocarpa POPTR_0002s25330 N 0.000
Pm020417 Prunus mume Pm020417 N 0.000
PRUPE_ppa001608mg Prunus persica PRUPE_ppa001608mg N 0.000
30204.m001803 Ricinus communis 30204.m001803 N 0.000
Si000497m.g Setaria italica Si000497m.g N 0.000
Solyc06g083590.2 Solanum lycopersicum Solyc06g083590.2 N 0.000
Solyc06g083600.1 Solanum lycopersicum Solyc06g083600.1 N 0.000
PGSC0003DMG400020155 Solanum tuberosum PGSC0003DMG400020155 N 0.000
PGSC0003DMG400020088 Solanum tuberosum PGSC0003DMG400020088 N 0.000
Sb03g043480 Sorghum bicolor Sb03g043480 N 0.000
TCM_003056 Theobroma cacao TCM_003056 N 0.000
TRAES3BF066400010CFD_g Triticum aestivum TRAES3BF066400010CFD_g N 0.000
ABI3 Vitis vinifera VIT_07s0005g05400 N 0.000
GRMZM2G133398 Zea mays GRMZM2G133398 N 0.000