16568_YMR042W (Saccharomyces mikatae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 16568_YMR042W T259297_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARG80
M08426_2.00
Saccharomyces cerevisiae
WGACDC

GHGTCW
ChIP-chip
Mathelier et al.(2014)
MA0271.1
0.979 0.979
ARG80
M08588_2.00
Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR

YTDYCNHVBNVGBHNN
Misc
DeBoer et al.(2011)
YMR042W_1483
0.979 0.979
ARG80
M10989_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ARGRI_01
0.979 0.979
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN

NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.771 0.771
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN

NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.771 0.771
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW

WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.771 0.771
MCM1
M10991_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.771 0.771
MCM1
M10992_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.771 0.771
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG

CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
16568_YMR042W MADS box 94 141

Links

Other MADS box family TFs
Other Saccharomyces mikatae TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
16570_YMR043W Saccharomyces mikatae 16570_YMR043W I 0.771
17142_YMR043W Saccharomyces paradoxus 17142_YMR043W I 0.771
17148_YMR042W Saccharomyces paradoxus 17148_YMR042W I 0.979
18568_YMR043W Saccharomyces bayanus 18568_YMR043W I 0.771
18574_YMR042W Saccharomyces bayanus 18574_YMR042W I 0.979
AACERI_AaceriABR098C Saccharomycetaceae sp ashbya aceri AACERI_AaceriABR098C I 0.729
AGOS_ABR098C Ashbya gossypii AGOS_ABR098C I 0.729
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.724
CAGL0F06237g Candida glabrata CAGL0F06237g I 0.771
CAGL0F06259g Candida glabrata CAGL0F06259g I 0.833
CAGL0I10769g Candida glabrata CAGL0I10769g I 0.792
CANTEDRAFT_132918 Candida tenuis CANTEDRAFT_132918 I 0.729
Ecym_2292 Eremothecium cymbalariae Ecym_2292 I 0.729
estExt_fgeneshMC_pm.C_40429 Mucor circinelloides estExt_fgeneshMC_pm.C_40429 I 0.708
e_gw1.1.687.1 Phycomyces blakesleeanus e_gw1.1.687.1 I 0.708
e_gw1.4.1161.1 Mucor circinelloides e_gw1.4.1161.1 I 0.708
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.724
fgeneshPB_pg.1__662 Phycomyces blakesleeanus fgeneshPB_pg.1__662 I 0.708
gw1.27.105.1 Phycomyces blakesleeanus gw1.27.105.1 I 0.729
gw1.3.516.1 Phycomyces blakesleeanus gw1.3.516.1 I 0.708
gw1.5.917.1 Mucor circinelloides gw1.5.917.1 I 0.729
gw1.8.565.1 Mucor circinelloides gw1.8.565.1 I 0.708
H311_00382 Anncaliia algerae H311_00382 I 0.778
KAFR_0A03700 Kazachstania africana KAFR_0A03700 I 0.771
KAFR_0B05280 Kazachstania africana KAFR_0B05280 I 0.792
KAFR_0B05290 Kazachstania africana KAFR_0B05290 I 0.854
KLLA0_F26807g Kluyveromyces lactis KLLA0_F26807g I 0.729
KLTH0B04026g Lachancea thermotolerans KLTH0B04026g I 0.729
KLTH0B04026g Kluyveromyces thermotolerans KLTH0B04026g I 0.729
KNAG_0H00480 Kazachstania naganishii KNAG_0H00480 I 0.771
KNAG_0M02350 Kazachstania naganishii KNAG_0M02350 I 0.854
Kpol_1073p26 Vanderwaltozyma polyspora Kpol_1073p26 I 0.771
Kpol_262p3 Vanderwaltozyma polyspora Kpol_262p3 I 0.771
Kwal_15001 Kluyveromyces waltii Kwal_15001 I 0.729
LALA0_S06e03510g Lachancea lanzarotensis LALA0_S06e03510g I 0.729
LDEC007646 Leptinotarsa decemlineata LDEC007646 I 0.708
NCAS_0A12960 Naumovozyma castellii NCAS_0A12960 I 0.917
NCAS_0A12970 Naumovozyma castellii NCAS_0A12970 I 0.771
NCAS_0H03140 Naumovozyma castellii NCAS_0H03140 I 0.792
NDAI_0B01280 Naumovozyma dairenensis NDAI_0B01280 I 0.771
NDAI_0B01290 Naumovozyma dairenensis NDAI_0B01290 I 0.875
NDAI_0C00510 Naumovozyma dairenensis NDAI_0C00510 I 0.771
PNEG_00576 Pneumocystis murina PNEG_00576 I 0.708
PredSwiss_ASS2010_3106.1 Pneumocystis carinii PredSwiss_ASS2010_3106.1 I 0.708
PredSwiss_CON2646.1 Pneumocystis carinii PredSwiss_CON2646.1 I 0.708
PredSwiss_CON3093.1 Pneumocystis carinii PredSwiss_CON3093.1 I 0.708
RO3G_06121 Rhizopus oryzae RO3G_06121 I 0.708
RO3G_11614 Rhizopus oryzae RO3G_11614 I 0.729
RO3G_15079 Rhizopus oryzae RO3G_15079 I 0.708
SAKL0B11704g Lachancea kluyveri SAKL0B11704g I 0.729
Scas_Contig649.23 Saccharomyces castellii Scas_Contig649.23 I 0.792
Scas_Contig709.26 Saccharomyces castellii Scas_Contig709.26 I 0.771
Scas_Contig709.27 Saccharomyces castellii Scas_Contig709.27 I 0.917
SKUD_077902 Saccharomyces kudriavzevii SKUD_077902 I 0.771
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.724
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.724
SU7_2521 Saccharomyces arboricola SU7_2521 I 0.771
TBLA_0B06860 Tetrapisispora blattae TBLA_0B06860 I 0.771
TBLA_0G01960 Tetrapisispora blattae TBLA_0G01960 I 0.771
TDEL_0B07000 Torulaspora delbrueckii TDEL_0B07000 I 0.854
TDEL_0B07010 Torulaspora delbrueckii TDEL_0B07010 I 0.771
TPHA_0C02530 Tetrapisispora phaffii TPHA_0C02530 I 0.771
TPHA_0N01520 Tetrapisispora phaffii TPHA_0N01520 I 0.771
ARG80 Saccharomyces cerevisiae YMR042W D 0.979
MCM1 Saccharomyces cerevisiae YMR043W D 0.771
ZBAI_03536 Zygosaccharomyces bailii ZBAI_03536 I 0.896
ZBAI_03537 Zygosaccharomyces bailii ZBAI_03537 I 0.771
ZBAI_08534 Zygosaccharomyces bailii ZBAI_08534 I 0.896
ZBAI_08535 Zygosaccharomyces bailii ZBAI_08535 I 0.771
ZYRO0F00726g Zygosaccharomyces rouxii ZYRO0F00726g I 0.771
ZYRO0F00748g Zygosaccharomyces rouxii ZYRO0F00748g I 0.896