16568_YMR042W (Saccharomyces mikatae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 16568_YMR042W T259297_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARG80
M08426_2.00
Saccharomyces cerevisiae
WGACDC

GHGTCW
ChIP-chip
Mathelier et al.(2014)
MA0271.1
0.979 0.979
ARG80
M08588_2.00
Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR

YTDYCNHVBNVGBHNN
Misc
DeBoer et al.(2011)
YMR042W_1483
0.979 0.979
ARG80
M10989_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ARGRI_01
0.979 0.979
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN

NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.771 0.771
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN

NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.771 0.771
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW

WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.771 0.771
MCM1
M10991_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.771 0.771
MCM1
M10992_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.771 0.771
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG

CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
16568_YMR042W MADS box 94 141

Links

Other MADS box family TFs
Other Saccharomyces mikatae TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cmyd_10015684 Chelonia mydas Cmyd_10015684 N 0.000
ENSAMEG00000018899 Ailuropoda melanoleuca ENSAMEG00000018899 N 0.000
ENSCHOG00000003372 Choloepus hoffmanni ENSCHOG00000003372 N 0.000
ENSCSAG00000018719 Chlorocebus sabaeus ENSCSAG00000018719 N 0.000
ENSCSAG00000019417 Chlorocebus sabaeus ENSCSAG00000019417 N 0.000
ENSMEUG00000007529 Macropus eugenii ENSMEUG00000007529 N 0.000
ENSMMUG00000032061 Macaca mulatta ENSMMUG00000032061 N 0.000
ENSMPUG00000018931 Mustela putorius furo ENSMPUG00000018931 N 0.000
ENSNLEG00000004079 Nomascus leucogenys ENSNLEG00000004079 N 0.000
ENSOANG00000015761 Ornithorhynchus anatinus ENSOANG00000015761 N 0.000
ENSOARG00000001810 Ovis aries ENSOARG00000001810 N 0.000
ENSP00000321370 Macaca fascicularis ENSP00000321370 N 0.000
ENSP00000321370-D1 Bos grunniens ENSP00000321370-D1 N 0.000
ENSPANG00000001756 Papio anubis ENSPANG00000001756 N 0.000
ENSPANG00000009749 Papio anubis ENSPANG00000009749 N 0.000
ENSPPYG00000013560 Pongo abelii ENSPPYG00000013560 N 0.000
ENSTSYG00000000791 Tarsius syrichta ENSTSYG00000000791 N 0.000
Myotis_brandtii_ZBED2_10003001 Myotis brandtii Myotis_brandtii_ZBED2_10003001 N 0.000
ZBED2 Pan troglodytes ENSPTRG00000015206 N 0.000
ZBED2 Pteropus vampyrus ENSPVAG00000002199 N 0.000
ZBED2 Sorex araneus ENSSARG00000010422 N 0.000
ZBED2 Sus scrofa ENSSSCG00000011936 N 0.000
ZBED2 Bos taurus ENSBTAG00000046637 N 0.000
ZBED2 Otolemur garnettii ENSOGAG00000034292 N 0.000
ZBED2 Oryctolagus cuniculus ENSOCUG00000029023 N 0.000
ZBED2 Dasypus novemcinctus ENSDNOG00000013027 N 0.000
ZBED2 Equus caballus ENSECAG00000001371 N 0.000
ZBED2 Homo sapiens ENSG00000177494 N 0.000
ZBED2 Gorilla gorilla ENSGGOG00000010755 N 0.000
ZBED2 Myotis lucifugus ENSMLUG00000024352 N 0.000
ZBED2 Choloepus hoffmanni ENSCHOG00000009685 N 0.000
ZBED2 Monodelphis domestica ENSMODG00000025309 N 0.000
ZBED2 Canis familiaris ENSCAFG00000030690 N 0.000
ZBED2 Callithrix jacchus ENSCJAG00000020209 N 0.000
ZBED3 Callithrix jacchus ENSCJAG00000019950 N 0.000
ZBED3 Macaca mulatta ENSMMUG00000021357 N 0.000
ZBED3 Sus scrofa ENSSSCG00000014095 N 0.000
ZBED3 Dasypus novemcinctus ENSDNOG00000041041 N 0.000