21954_YPL089C (Saccharomyces mikatae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 21954_YPL089C T259304_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RLM1
M08590_2.00
Saccharomyces cerevisiae
NTAWWWWTAG

CTAWWWWTAN
Misc
DeBoer et al.(2011)
YPL089C_419
1.000 1.000
RLM1
M08459_2.00
Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN

NDRKCTATWWWTAGAWHN
COMPILED
Mathelier et al.(2014)
MA0369.1
1.000 1.000
SMP1
M01557_2.00
Saccharomyces cerevisiae
TTAATAAA

TTTATTAA
PBM
Zhu et al.(2009)
Smp1
0.917 0.917
SMP1
M08587_2.00
Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN

NNBWNNYWYAATTRWRKVHNV
Misc
DeBoer et al.(2011)
YBR182C_864
0.917 0.917
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
21954_YPL089C MADS box 10 57

Links

Other MADS box family TFs
Other Saccharomyces mikatae TFs

Invalid Input OrderBy

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action