chr1.LjB17A22.60.nc (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr1.LjB17A22.60.nc T259317_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjB17A22.60.nc MADS box 14 61

Links

Other MADS box family TFs
Other Lotus japonicus TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.708
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
AGL62 Arabidopsis thaliana AT5G60440 I 0.729
MDP0000434703 Malus domestica MDP0000434703 I 0.729
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.708
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.729
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.750
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.708
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.708
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.708
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.729
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.729
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.729
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.708
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.729
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.708
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.729
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.708
chr1.LjB17A22.10.nc Lotus japonicus chr1.LjB17A22.10.nc N 0.917
chr1.LjB17A22.80.nc Lotus japonicus chr1.LjB17A22.80.nc N 0.917
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
LjSGA_056509.1 Lotus japonicus LjSGA_056509.1 N 0.938
LjSGA_064645.1 Lotus japonicus LjSGA_064645.1 N 0.812
LjSGA_070157.1 Lotus japonicus LjSGA_070157.1 N 0.787
LjSGA_074894.2 Lotus japonicus LjSGA_074894.2 N 0.938
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.729
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.708
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.729
MDP0000221590 Malus domestica MDP0000221590 N 0.708
MDP0000233925 Malus domestica MDP0000233925 N 0.729
MDP0000278770 Malus domestica MDP0000278770 N 0.729
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.729
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.708
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.729
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.708
LjSGA_102731.1 Lotus japonicus LjSGA_102731.1 N 0.833
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.729
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.750
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.708
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.729
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.708
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.750
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.708
TCM_006323 Theobroma cacao TCM_006323 N 0.729
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.729
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.729
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
AGL28 Arabidopsis thaliana AT1G01530 N 0.729
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.729
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.708
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.729
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.729
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.729
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.708
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.708
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.729
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.729
Ca_04659 Cicer arietinum Ca_04659 N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.729
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.708
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.750
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.750
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.729
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.708
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.750
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.750
Ca_04660 Cicer arietinum Ca_04660 N 0.708
Ca_04661 Cicer arietinum Ca_04661 N 0.708
Ca_04665 Cicer arietinum Ca_04665 N 0.708
Cla006571 Citrullus lanatus Cla006571 N 0.750
Pm021070 Prunus mume Pm021070 N 0.708
Pm021071 Prunus mume Pm021071 N 0.750
30099.m001672 Ricinus communis 30099.m001672 N 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.729
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708