chr2.CM0249.370.nd (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr2.CM0249.370.nd T259321_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.875 0.875
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.812 0.812
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.812 0.812
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.750 0.750
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.750 0.750
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.729 0.729
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.708 0.708
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0249.370.nd MADS box 10 57

Links

Other MADS box family TFs
Other Lotus japonicus TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA01G37470 Glycine max GLYMA01G37470 I 1.000
GLYMA11G07820 Glycine max GLYMA11G07820 I 1.000
MTR_5g021270 Medicago truncatula MTR_5g021270 I 1.000
Ca_01994 Cicer arietinum Ca_01994 I 1.000
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.875
MDP0000184294 Malus domestica MDP0000184294 I 0.875
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.875
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.875
MDP0000315938 Malus domestica MDP0000315938 I 0.875
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.854
MDP0000224779 Malus domestica MDP0000224779 I 0.854
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.854
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.854
MDP0000133037 Malus domestica MDP0000133037 I 0.854
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.854
Pm026712 Prunus mume Pm026712 I 0.851
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.833
29782.m000119 Ricinus communis 29782.m000119 I 0.833
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.833
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.833
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.812
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.812
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.812
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.812
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.812
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.812
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.812
Cla021117 Citrullus lanatus Cla021117 I 0.812
TCM_000266 Theobroma cacao TCM_000266 I 0.812
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.812
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.812
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.812
AP3 Arabidopsis thaliana AT3G54340 D 0.812
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.812
AP3 Vitis vinifera VIT_18s0001g13460 I 0.792
Ca_04909 Cicer arietinum Ca_04909 I 0.792
Pm006266 Prunus mume Pm006266 I 0.792
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.792
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.792
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.792
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.792
Bra014822 Brassica rapa Bra014822 I 0.792
Bra007067 Brassica rapa Bra007067 I 0.792
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.792
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.792
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.792
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.792
Bo8g083600 Brassica oleracea Bo8g083600 I 0.792
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.792
Bo4g120010 Brassica oleracea Bo4g120010 I 0.792
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.792
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.771
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.771
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.771
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.771
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.771
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.771
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.771
mgf015533m Mimulus guttatus mgf015533m I 0.771
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.771
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.771
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.771
mgf000046m Mimulus guttatus mgf000046m I 0.766
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.760
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.750
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.750
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.750
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.750
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.750
AP3 Populus trichocarpa POPTR_0002s02990 I 0.750
TCM_034148 Theobroma cacao TCM_034148 I 0.750
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.750
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.729
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.729
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.729
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.729
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.729
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.729
TCM_035212 Theobroma cacao TCM_035212 I 0.729
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.729
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.729
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.729
Ca_03887 Cicer arietinum Ca_03887 I 0.729
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.729
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.729
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.729
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.729
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.729
29648.m001978 Ricinus communis 29648.m001978 I 0.729
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.729
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.708
Gorai.005G147200 Gossypium raimondii Gorai.005G147200 I 0.708
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.708
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.708
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.708
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.708
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.708
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.708
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.708
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.708
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.708
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.708
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.708
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.708
OB06G35020 Oryza brachyantha OB06G35020 I 0.708
OBART06G27230 Oryza barthii OBART06G27230 I 0.708
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.708
MADS16 Oryza sativa OS06G0712700 D 0.708
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.708
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.708
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.708
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.708
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.708
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.708
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.708
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.708
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.708
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.708
TT16 Vitis vinifera VIT_01s0011g01560 I 0.708
Cla023547 Citrullus lanatus Cla023547 I 0.708
Pm004718 Prunus mume Pm004718 I 0.708
Ca_13111 Cicer arietinum Ca_13111 I 0.708
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.708
PI Vitis vinifera VIT_18s0001g01760 I 0.708
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.708
mgf003143m Mimulus guttatus mgf003143m I 0.708
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.708
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.708
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.708
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.708
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.708
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.708
Si007221m.g Setaria italica Si007221m.g I 0.708
mgf008207m Mimulus guttatus mgf008207m I 0.708
mgf006158m Mimulus guttatus mgf006158m I 0.708
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.708
Aquca_006_00074 Aquilegia coerulea Aquca_006_00074 I 0.708
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.708
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.708