chr4.CM0100.30.nc (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr4.CM0100.30.nc T259334_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.771 0.771
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.771 0.771
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.771 0.771
Q9ATE2_PETHY
M11007_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP29_01
0.729 0.729
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN

NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.708 0.708
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH

DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.708 0.708
squamosa
M02697_2.00
Antirrhinum majus
MYAWAWAWRGHAAN

NTTDCYWTWTWTRK
SELEX
Mathelier et al.(2014)
MA0082.1
0.708 0.708
AGL15
M10927_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.708 0.708
AGL15
M10928_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.708 0.708
Q38742_ANTMA
M11000_2.00
Antirrhinum majus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SQUA_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0100.30.nc MADS box 10 57

Links

Other MADS box family TFs
Other Lotus japonicus TFs

240 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.750
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.750
Q38742_ANTMA Antirrhinum majus Q38742_ANTMA D 0.708
squamosa Antirrhinum majus CAA45228.1 D 0.708
Afo_R010314 Aptenodytes forsteri Afo_R010314 I 0.700
Aquca_035_00266 Aquilegia coerulea Aquca_035_00266 I 0.708
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.750
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.771
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.792
AGL79 Arabidopsis lyrata Al_scaffold_0005_914 I 0.729
TT16 Arabidopsis lyrata fgenesh2_kg.6__2319__AT5G23260.2 I 0.708
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.771
AGL71 Arabidopsis lyrata Al_scaffold_0008_1558 I 0.708
TT16 Arabidopsis thaliana AT5G23260 I 0.708
SVP Arabidopsis thaliana AT2G22540 D 0.771
AGL79 Arabidopsis thaliana AT3G30260 I 0.708
AGL24 Arabidopsis thaliana AT4G24540 I 0.792
AGL15 Arabidopsis thaliana AT5G13790 D 0.708
AGL71 Arabidopsis thaliana AT5G51870 I 0.708
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.771
Bostr.0556s0620 Boechera stricta Bostr.0556s0620 I 0.729
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.771
Bostr.10199s0104 Boechera stricta Bostr.10199s0104 I 0.708
ENSP00000396219-D1 Bos grunniens ENSP00000396219-D1 I 0.700
Bo2g149440 Brassica oleracea Bo2g149440 I 0.729
Bo2g161560 Brassica oleracea Bo2g161560 I 0.729
Bo4g149800 Brassica oleracea Bo4g149800 I 0.792
Bo7g088660 Brassica oleracea Bo7g088660 I 0.708
Bo7g097810 Brassica oleracea Bo7g097810 I 0.729
Bo1g039080 Brassica oleracea Bo1g039080 I 0.750
Bo8g101000 Brassica oleracea Bo8g101000 I 0.771
Bo9g009030 Brassica oleracea Bo9g009030 I 0.708
Bo9g014270 Brassica oleracea Bo9g014270 I 0.729
Bo7g109590 Brassica oleracea Bo7g109590 I 0.792
Bra013812 Brassica rapa Bra013812 I 0.750
Bra013028 Brassica rapa Bra013028 I 0.729
Bra019221 Brassica rapa Bra019221 I 0.792
Bra020742 Brassica rapa Bra020742 I 0.729
Bra025411 Brassica rapa Bra025411 I 0.708
Bra026507 Brassica rapa Bra026507 I 0.708
Bra029314 Brassica rapa Bra029314 I 0.708
Bra030228 Brassica rapa Bra030228 I 0.792
Bra036201 Brassica rapa Bra036201 I 0.708
Bra038511 Brassica rapa Bra038511 I 0.771
Brh_R003791 Buceros rhinoceros Brh_R003791 I 0.700
Aan_R013766 Calypte anna Aan_R013766 I 0.700
MEF2C Canis familiaris ENSCAFG00000008302 I 0.700
PK28167.1 Cannabis sativa PK28167.1 I 0.792
PK08595.1 Cannabis sativa PK08595.1 I 0.708
PK11571.1 Cannabis sativa PK11571.1 I 0.833
PK20651.1 Cannabis sativa PK20651.1 I 0.771
Cagra.2834s0001 Capsella grandiflora Cagra.2834s0001 I 0.729
Cagra.4348s0011 Capsella grandiflora Cagra.4348s0011 I 0.708
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.771
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.771
Carubv10002792m.g Capsella rubella Carubv10002792m.g I 0.708
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.771
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.771
Carubv10018408m.g Capsella rubella Carubv10018408m.g I 0.729
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.792
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.729
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.812
ENSCSAG00000014772 Chlorocebus sabaeus ENSCSAG00000014772 I 0.700
Ca_12416 Cicer arietinum Ca_12416 I 0.750
Ca_21060 Cicer arietinum Ca_21060 I 0.771
Ca_01491 Cicer arietinum Ca_01491 I 0.750
Cla013108 Citrullus lanatus Cla013108 N 0.750
Cla014322 Citrullus lanatus Cla014322 I 0.812
Cla010047 Citrullus lanatus Cla010047 I 0.708
Cla022499 Citrullus lanatus Cla022499 I 0.729
Cla010989 Citrullus lanatus Cla010989 I 0.708
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.792
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.708
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.792
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.766
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.766
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.792
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.708
Cucsa.190400 Cucumis sativus Cucsa.190400 N 0.750
Cucsa.174530 Cucumis sativus Cucsa.174530 I 0.708
Cucsa.331840 Cucumis sativus Cucsa.331840 I 0.833
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.812
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.750
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.771
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.708
Eucgr.F02146 Eucalyptus grandis Eucgr.F02146 I 0.729
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.729
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.750
Eucgr.I02059 Eucalyptus grandis Eucgr.I02059 I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
Eucgr.K02547 Eucalyptus grandis Eucgr.K02547 I 0.708
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.792
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.729
Thhalv10004826m.g Eutrema salsugineum Thhalv10004826m.g I 0.729
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.771
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.723
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.792
gene30741-v1.0-hybrid Fragaria vesca gene30741-v1.0-hybrid I 0.723
gene04228-v1.0-hybrid Fragaria vesca gene04228-v1.0-hybrid I 0.729
gene29503-v1.0-hybrid Fragaria vesca gene29503-v1.0-hybrid I 0.750
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.723
gene12119-v1.0-hybrid Fragaria vesca gene12119-v1.0-hybrid I 0.708
Gfo_R008233 Geospiza fortis Gfo_R008233 I 0.700
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.708
GLYMA07G30040 Glycine max GLYMA07G30040 I 0.979
GLYMA19G04326 Glycine max GLYMA19G04326 I 0.708
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.771
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.771
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.771
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.792
GLYMA08G07260 Glycine max GLYMA08G07260 I 0.979
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.792
GLYMA12G17721 Glycine max GLYMA12G17721 I 0.787
GLYMA15G06314 Glycine max GLYMA15G06314 I 0.729
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.917
GLYMA13G33051 Glycine max GLYMA13G33051 I 0.896
GLYMA13G33031 Glycine max GLYMA13G33031 I 0.729
GLYMA13G06811 Glycine max GLYMA13G06811 I 0.708
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.771
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.812
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.729
Gorai.001G090000 Gossypium raimondii Gorai.001G090000 I 0.708
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.771
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.812
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.812
Gorai.005G147200 Gossypium raimondii Gorai.005G147200 I 0.708
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.729
LPERR02G27330 Leersia perrieri LPERR02G27330 I 0.708
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.771
Lus10034370.g Linum usitatissimum Lus10034370.g I 0.708
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.771
Lus10007100.g Linum usitatissimum Lus10007100.g I 0.708
Lus10005325.g Linum usitatissimum Lus10005325.g I 0.708
Lus10005081.g Linum usitatissimum Lus10005081.g I 0.708
Lus10020477.g Linum usitatissimum Lus10020477.g I 0.729
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.792
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.729
MDP0000135652 Malus domestica MDP0000135652 I 0.729
MDP0000144516 Malus domestica MDP0000144516 I 0.729
MDP0000209705 Malus domestica MDP0000209705 I 0.812
MDP0000233948 Malus domestica MDP0000233948 I 0.792
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.812
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.792
cassava39138.m1 Manihot esculenta cassava39138.m1 I 0.708
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.812
cassava2598.m1 Manihot esculenta cassava2598.m1 I 0.708
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.833
MTR_4g102530 Medicago truncatula MTR_4g102530 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.750
MTR_2g009890 Medicago truncatula MTR_2g009890 I 0.708
MTR_1g041615 Medicago truncatula MTR_1g041615 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.750
MTR_4g093970 Medicago truncatula MTR_4g093970 I 0.958
ENSMICG00000005703 Microcebus murinus ENSMICG00000005703 I 0.737
mgf015964m Mimulus guttatus mgf015964m I 0.875
mgf025830m Mimulus guttatus mgf025830m I 0.750
mgf023192m Mimulus guttatus mgf023192m I 0.750
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.750
GSMUA_Achr2G11820_001 Musa acuminata GSMUA_Achr2G11820_001 I 0.708
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.792
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.792
GSMUA_Achr5G10250_001 Musa acuminata GSMUA_Achr5G10250_001 I 0.708
NECAME_18899 Necator americanus NECAME_18899 I 0.711
OBART03G06320 Oryza barthii OBART03G06320 I 0.708
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.708
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.708
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.708
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.708
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.708
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.708
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.708
OS03G0186600 Oryza sativa OS03G0186600 I 0.708
Pavir.Da01333 Panicum virgatum Pavir.Da01333 I 0.729
Pavir.Db00414 Panicum virgatum Pavir.Db00414 I 0.708
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.708
Q9ATE2_PETHY Petunia x hybrida Q9ATE2_PETHY D 0.729
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.708
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.708
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.708
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.729
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.708
POPTR_0017s07170 Populus trichocarpa POPTR_0017s07170 I 0.792
POPTR_0004s11430 Populus trichocarpa POPTR_0004s11430 I 0.708
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.771
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.833
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.833
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.771
AGL15 Populus trichocarpa POPTR_0009s06060 I 0.729
POPTR_0017s13400 Populus trichocarpa POPTR_0017s13400 I 0.708
POPTR_0007s03310 Populus trichocarpa POPTR_0007s03310 I 0.771
Pm015397 Prunus mume Pm015397 I 0.729
Pm002166 Prunus mume Pm002166 I 0.833
Pm022002 Prunus mume Pm022002 I 0.833
Pm025026 Prunus mume Pm025026 I 0.708
PRUPE_ppa010249mg Prunus persica PRUPE_ppa010249mg I 0.729
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.833
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.854
PRUPE_ppa010308mg Prunus persica PRUPE_ppa010308mg I 0.708
29838.m001690 Ricinus communis 29838.m001690 I 0.854
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.771
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.771
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.771
SapurV1A.0027s0860 Salix purpurea SapurV1A.0027s0860 I 0.729
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.833
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.729
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.729
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.729
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.729
Si037358m.g Setaria italica Si037358m.g I 0.708
Si007641m.g Setaria italica Si007641m.g I 0.708
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.875
Solyc10g080030.1 Solanum lycopersicum Solyc10g080030.1 I 0.729
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.771
Solyc02g089210.2 Solanum lycopersicum Solyc02g089210.2 I 0.729
PGSC0003DMG400001378 Solanum tuberosum PGSC0003DMG400001378 I 0.708
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.771
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.875
PGSC0003DMG400026563 Solanum tuberosum PGSC0003DMG400026563 I 0.708
PGSC0003DMG400023729 Solanum tuberosum PGSC0003DMG400023729 I 0.750
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.792
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.708
TCM_034501 Theobroma cacao TCM_034501 I 0.792
TCM_007378 Theobroma cacao TCM_007378 I 0.833
TCM_000992 Theobroma cacao TCM_000992 I 0.750
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.732
SVP Vitis vinifera VIT_00s0313g00070 I 0.771
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.833
TT16 Vitis vinifera VIT_01s0011g01560 I 0.708
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.771
VIT_03s0017g00440 Vitis vinifera VIT_03s0017g00440 I 0.812
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.854
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I 0.812
VIT_03s0167g00100 Vitis vinifera VIT_03s0167g00100 I 0.812
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.812
AGL79 Vitis vinifera VIT_14s0083g01030 I 0.708
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.833
VIT_15s0024g01860 Vitis vinifera VIT_15s0024g01860 I 0.792
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.708
GRMZM2G137289 Zea mays GRMZM2G137289 I 0.708
GRMZM2G046885 Zea mays GRMZM2G046885 I 0.708