estExt_fgenesh1_pm.C_50209 (Cryphonectria parasitica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 estExt_fgenesh1_pm.C_50209 T259356_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
srfA
M02283_2.00
Dictyostelium discoideum
MYDWWWNNRD

HYNNWWWHRK
PBM
Weirauch et al.(2014)
pTH5539
0.917 0.917
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN

NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.875 0.875
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN

NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.875 0.875
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW

WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.875 0.875
MCM1
M10991_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.875 0.875
MCM1
M10992_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.875 0.875
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG

CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.875 0.875
Srf
M00178_2.00
Mus musculus
NNDDWWHHNN

NNDDWWHHNN
PBM
Badis et al.(2009)
Srf_3509
0.812 0.812
SRF
M03341_2.00
Homo sapiens
DCCWTATATGGT

ACCATATAWGGH
SELEX
Jolma et al.(2013)
SRF_1
0.812 0.812
SRF
M03342_2.00
Homo sapiens
TKHCCWTATATGGKMA

TKMCCATATAWGGDMA
SELEX
Jolma et al.(2013)
SRF_2
0.812 0.812
SRF
M05553_2.00
Homo sapiens
CCNTANAWGG

CCWTNTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX
0.812 0.812
SRF
M07981_2.00
Homo sapiens
NNNWDNCCAWAWAWGGNVD

HBNCCWTWTWTGGNHWNNN
ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha
0.812 0.812
SRF
M07982_2.00
Homo sapiens
CCAWATAAGGNMAD

HTKNCCTTATWTGG
ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha
0.812 0.812
SRF
M07983_2.00
Homo sapiens
NNWNNCCAWAWAWGGNVD

HBNCCWTWTWTGGNNWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha
0.812 0.812
SRF
M07984_2.00
Homo sapiens
GNCCAWATADGGHMANN

NNTKDCCHTATWTGGNC
ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha
0.812 0.812
SRF
M09249_2.00
Homo sapiens
HNWBVCCAWAWAWGGNRR

YYNCCWTWTWTGGBVWND
Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A
0.812 0.812
Srf
M09254_2.00
Mus musculus
NWDVCCAWAWAWGGVMR

YKBCCWTWTWTGGBHWN
Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A
0.812 0.812
Srf
M09598_2.00
Mus musculus
CCWWATWWGGNH

DNCCWWATWWGG
Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al.
0.812 0.812
SRF
M10947_2.00
Homo sapiens
MNBWCCWTATAWGGGCAT

ATGCCCWTATAWGGWVNK
Transfac
Matys et al.(2006)
V$SRF_01
0.812 0.812
SRF
M10948_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_02
0.812 0.812
SRF
M10949_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_03
0.812 0.812
SRF
M10950_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_09
0.812 0.812
SRF
M10951_2.00
Homo sapiens
DCCWTATAWGGVSHB

VDSBCCWTATAWGGH
Transfac
Matys et al.(2006)
V$SRF_C
0.812 0.812
SRF
M10952_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q3
0.812 0.812
SRF
M10953_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q4
0.812 0.812
SRF
M10954_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_01
0.812 0.812
SRF
M10955_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRF_Q5_02
0.812 0.812
SRF
M10956_2.00
Homo sapiens
BNCCAWATAWGGVN

NBCCWTATWTGGNV
Transfac
Matys et al.(2006)
V$SRF_Q6
0.812 0.812
SRF
M05554_2.00
Homo sapiens
CCNTAYAWGG

CCWTRTANGG
SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX
0.812 0.812
bs
M03915_2.00
Drosophila melanogaster
NCCWTATAWGGN

NCCWTATAWGGN
SELEX
Nitta et al.(2015)
bs_1
0.771 0.771
bs
M03916_2.00
Drosophila melanogaster
NCCWTAHAWGGH

DCCWTDTAWGGN
SELEX
Nitta et al.(2015)
bs_2
0.771 0.771
unc-120
M00684_2.00
Caenorhabditis elegans
CHWAWWDGG

CCHWWTWDG
PBM
Narasimhan et al.(2015)
pTH10822
0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pm.C_50209 MADS box 60 107

Links

Other MADS box family TFs
Other Cryphonectria parasitica TFs

482 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29955.m001177 Ricinus communis 29955.m001177 I 0.000
30226.m002055 Ricinus communis 30226.m002055 I 0.000
AMTR_s00040p00057740 Amborella trichopoda AMTR_s00040p00057740 I 0.000
AMTR_s00101p00038080 Amborella trichopoda AMTR_s00101p00038080 I 0.000
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.000
Aquca_023_00151 Aquilegia coerulea Aquca_023_00151 I 0.000
AREB3 Arabidopsis lyrata scaffold_502836.1 I 0.000
BGIOSGA000613 Oryza indica BGIOSGA000613 I 0.000
BGIOSGA010835 Oryza indica BGIOSGA010835 I 0.000
BGIOSGA020087 Oryza indica BGIOSGA020087 I 0.000
BGIOSGA026419 Oryza indica BGIOSGA026419 I 0.000
Bo4g112690 Brassica oleracea Bo4g112690 I 0.000
Bo6g072380 Brassica oleracea Bo6g072380 I 0.000
Bo8g091160 Brassica oleracea Bo8g091160 I 0.000
Bostr.20505s0068 Boechera stricta Bostr.20505s0068 I 0.000
Bra003253 Brassica rapa Bra003253 I 0.000
Bra007274 Brassica rapa Bra007274 I 0.000
Bra007276 Brassica rapa Bra007276 I 0.000
Bra014668 Brassica rapa Bra014668 I 0.000
Bra016953 Brassica rapa Bra016953 I 0.000
BRADI2G21820 Brachypodium distachyon BRADI2G21820 I 0.000
BRADI2G53060 Brachypodium distachyon BRADI2G53060 I 0.000
BRADI4G43850 Brachypodium distachyon BRADI4G43850 I 0.000
Cagra.0578s0014 Capsella grandiflora Cagra.0578s0014 I 0.000
Cagra.1671s0014 Capsella grandiflora Cagra.1671s0014 N 0.000
Carubv10011573m.g Capsella rubella Carubv10011573m.g N 0.000
Carubv10018770m.g Capsella rubella Carubv10018770m.g I 0.000
cassava22423.valid.m1 Manihot esculenta cassava22423.valid.m1 I 0.000
Ca_08143 Cicer arietinum Ca_08143 I 0.000
Ca_23748 Cicer arietinum Ca_23748 I 0.000
chr4.CM0337.330.nc Lotus japonicus chr4.CM0337.330.nc I 0.000
chr6.CM0314.840.nd Lotus japonicus chr6.CM0314.840.nd N 0.000
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.000
Ciclev10001893m.g Citrus clementina Ciclev10001893m.g I 0.000
Ciclev10002029m.g Citrus clementina Ciclev10002029m.g I 0.000
Ciclev10012205m.g Citrus clementina Ciclev10012205m.g I 0.000
Cla000389 Citrullus lanatus Cla000389 I 0.000
Cla013878 Citrullus lanatus Cla013878 I 0.000
Cucsa.184670 Cucumis sativus Cucsa.184670 I 0.000
Cucsa.364380 Cucumis sativus Cucsa.364380 I 0.000
DPBF3 Arabidopsis thaliana AT3G56850 D 0.000
Eucgr.J00320 Eucalyptus grandis Eucgr.J00320 I 0.000
Eucgr.K01706 Eucalyptus grandis Eucgr.K01706 I 0.000
evm.TU.supercontig_21.207 Carica papaya evm.TU.supercontig_21.207 N 0.000
evm.TU.supercontig_33.182 Carica papaya evm.TU.supercontig_33.182 I 0.000
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.000
F775_17024 Aegilops tauschii F775_17024 I 0.000
F775_28711 Aegilops tauschii F775_28711 I 0.000
F775_31964 Aegilops tauschii F775_31964 I 0.000
gene00393-v1.0-hybrid Fragaria vesca gene00393-v1.0-hybrid I 0.000
gene11837-v1.0-hybrid Fragaria vesca gene11837-v1.0-hybrid N 0.000
GLYMA03G00580 Glycine max GLYMA03G00580 I 0.000
GLYMA05G25200 Glycine max GLYMA05G25200 I 0.000
GLYMA08G08220 Glycine max GLYMA08G08220 N 0.000
GLYMA08G19590 Glycine max GLYMA08G19590 N 0.000
GLYMA08G24340 Glycine max GLYMA08G24340 I 0.000
GLYMA15G05440 Glycine max GLYMA15G05440 N 0.000
GLYMA15G35080 Glycine max GLYMA15G35080 I 0.000
GLYMA19G30230 Glycine max GLYMA19G30230 I 0.000
Gorai.002G207000 Gossypium raimondii Gorai.002G207000 I 0.000
Gorai.005G259700 Gossypium raimondii Gorai.005G259700 I 0.000
Gorai.009G301200 Gossypium raimondii Gorai.009G301200 I 0.000
Gorai.009G301400 Gossypium raimondii Gorai.009G301400 I 0.000
GRMZM2G077124 Zea mays GRMZM2G077124 I 0.000
GRMZM2G161009 Zea mays GRMZM2G161009 I 0.000
GSMUA_Achr11G15610_001 Musa acuminata GSMUA_Achr11G15610_001 I 0.000
GSMUA_Achr8G21560_001 Musa acuminata GSMUA_Achr8G21560_001 I 0.000
GSMUA_Achr9G08900_001 Musa acuminata GSMUA_Achr9G08900_001 N 0.000
GSMUA_AchrUn_randomG12190_001 Musa acuminata GSMUA_AchrUn_randomG12190_001 I 0.000
LPERR01G30010 Leersia perrieri LPERR01G30010 I 0.000
LPERR05G16840 Leersia perrieri LPERR05G16840 I 0.000
Lus10008927.g Linum usitatissimum Lus10008927.g I 0.000
Lus10028889.g Linum usitatissimum Lus10028889.g I 0.000
MDP0000198495 Malus domestica MDP0000198495 I 0.000
MDP0000215106 Malus domestica MDP0000215106 I 0.000
MDP0000273211 Malus domestica MDP0000273211 I 0.000
MDP0000706379 Malus domestica MDP0000706379 I 0.000
mgf008848m Mimulus guttatus mgf008848m N 0.000
mgf009464m Mimulus guttatus mgf009464m N 0.000
mgf011003m Mimulus guttatus mgf011003m I 0.000
mgf020385m Mimulus guttatus mgf020385m N 0.000
MLOC_16096 Hordeum vulgare MLOC_16096 I 0.000
MLOC_4554 Hordeum vulgare MLOC_4554 I 0.000
MLOC_6534 Hordeum vulgare MLOC_6534 I 0.000
MTR_1g098590 Medicago truncatula MTR_1g098590 N 0.000
MTR_3g010660 Medicago truncatula MTR_3g010660 I 0.000
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.000
MTR_4g094390 Medicago truncatula MTR_4g094390 I 0.000
MTR_7g088090 Medicago truncatula MTR_7g088090 I 0.000
OB01G43630 Oryza brachyantha OB01G43630 I 0.000
OB05G28440 Oryza brachyantha OB05G28440 I 0.000
OB07G32300 Oryza brachyantha OB07G32300 I 0.000
OBART01G34790 Oryza barthii OBART01G34790 I 0.000
OBART05G21000 Oryza barthii OBART05G21000 I 0.000
OBART07G26790 Oryza barthii OBART07G26790 I 0.000
OGLUM01G38810 Oryza glumaepatula OGLUM01G38810 I 0.000
OGLUM03G15730 Oryza glumaepatula OGLUM03G15730 I 0.000
OGLUM05G22240 Oryza glumaepatula OGLUM05G22240 I 0.000
OGLUM07G26780 Oryza glumaepatula OGLUM07G26780 I 0.000
OLONG_002030 Oryza longistaminata OLONG_002030 I 0.000
OLONG_003399 Oryza longistaminata OLONG_003399 I 0.000
OMERI01G32080 Oryza meridionalis OMERI01G32080 I 0.000
OMERI03G14020 Oryza meridionalis OMERI03G14020 I 0.000
OMERI05G18990 Oryza meridionalis OMERI05G18990 I 0.000
OMERI07G23410 Oryza meridionalis OMERI07G23410 I 0.000
ONIVA01G39770 Oryza nivara ONIVA01G39770 I 0.000
ONIVA03G16560 Oryza nivara ONIVA03G16560 I 0.000
ONIVA05G21710 Oryza nivara ONIVA05G21710 I 0.000
ONIVA07G26520 Oryza nivara ONIVA07G26520 I 0.000
OPUNC01G33790 Oryza punctata OPUNC01G33790 I 0.000
OPUNC07G25180 Oryza punctata OPUNC07G25180 I 0.000
orange1.1g020697m.g Citrus sinensis orange1.1g020697m.g I 0.000
orange1.1g021146m.g Citrus sinensis orange1.1g021146m.g I 0.000
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.000
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.000
ORGLA01G0286100 Oryza glaberrima ORGLA01G0286100 I 0.000
ORGLA03G0149400 Oryza glaberrima ORGLA03G0149400 I 0.000
ORUFI01G38120 Oryza rufipogon ORUFI01G38120 I 0.000
ORUFI05G22290 Oryza rufipogon ORUFI05G22290 I 0.000
ORUFI07G27740 Oryza rufipogon ORUFI07G27740 I 0.000
OS01G0813100 Oryza sativa OS01G0813100 I 0.000
OS05G0489700 Oryza sativa OS05G0489700 I 0.000
OS07G0686100 Oryza sativa OS07G0686100 I 0.000
Pavir.Ba00263 Panicum virgatum Pavir.Ba00263 I 0.000
Pavir.Bb03699 Panicum virgatum Pavir.Bb03699 I 0.000
Pavir.Eb03523 Panicum virgatum Pavir.Eb03523 I 0.000
Pavir.Ib01001 Panicum virgatum Pavir.Ib01001 I 0.000
Pavir.J05672 Panicum virgatum Pavir.J05672 I 0.000
Pavir.J34085 Panicum virgatum Pavir.J34085 I 0.000
Pavir.J38875 Panicum virgatum Pavir.J38875 I 0.000
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.000
PGSC0003DMG400023897 Solanum tuberosum PGSC0003DMG400023897 N 0.000
PGSC0003DMG400028121 Solanum tuberosum PGSC0003DMG400028121 I 0.000
PGSC0003DMG400029774 Solanum tuberosum PGSC0003DMG400029774 I 0.000
PK16522.1 Cannabis sativa PK16522.1 N 0.000
PK22350.1 Cannabis sativa PK22350.1 N 0.000
PK24978.1 Cannabis sativa PK24978.1 D 0.000
Pm004043 Prunus mume Pm004043 I 0.000
Pm016826 Prunus mume Pm016826 I 0.000
POPTR_0008s01130 Populus trichocarpa POPTR_0008s01130 I 0.000
POPTR_0010s25440 Populus trichocarpa POPTR_0010s25440 I 0.000
POPTR_0010s25460 Populus trichocarpa POPTR_0010s25460 I 0.000
PRUPE_ppa008716mg Prunus persica PRUPE_ppa008716mg I 0.000
PRUPE_ppa025544mg Prunus persica PRUPE_ppa025544mg I 0.000
SapurV1A.0036s0930 Salix purpurea SapurV1A.0036s0930 I 0.000
SapurV1A.0036s0950 Salix purpurea SapurV1A.0036s0950 I 0.000
SapurV1A.0070s0720 Salix purpurea SapurV1A.0070s0720 I 0.000
Sb01g036810 Sorghum bicolor Sb01g036810 I 0.000
Sb02g043620 Sorghum bicolor Sb02g043620 I 0.000
Sb03g040510 Sorghum bicolor Sb03g040510 I 0.000
Sb09g023920 Sorghum bicolor Sb09g023920 I 0.000
Si001731m.g Setaria italica Si001731m.g I 0.000
Si002173m.g Setaria italica Si002173m.g I 0.000
Si022639m.g Setaria italica Si022639m.g I 0.000
Solyc01g104650.2 Solanum lycopersicum Solyc01g104650.2 I 0.000
Solyc10g081350.1 Solanum lycopersicum Solyc10g081350.1 I 0.000
TCM_006432 Theobroma cacao TCM_006432 I 0.000
TCM_044596 Theobroma cacao TCM_044596 I 0.000
Thhalv10006121m.g Eutrema salsugineum Thhalv10006121m.g I 0.000
TRAES3BF001900070CFD_g Triticum aestivum TRAES3BF001900070CFD_g I 0.000
Traes_1AL_1FFBFB058 Triticum aestivum Traes_1AL_1FFBFB058 I 0.000
Traes_1BL_DE2CF9613 Triticum aestivum Traes_1BL_DE2CF9613 I 0.000
Traes_1DL_D9BA83221 Triticum aestivum Traes_1DL_D9BA83221 I 0.000
Traes_3AL_58F294736 Triticum aestivum Traes_3AL_58F294736 I 0.000
Traes_3DL_20ED2EA4C Triticum aestivum Traes_3DL_20ED2EA4C I 0.000
Traes_5BL_FB4EDEA83 Triticum aestivum Traes_5BL_FB4EDEA83 I 0.000
Traes_5DL_73CE92096 Triticum aestivum Traes_5DL_73CE92096 I 0.000
TRIUR3_06726 Triticum urartu TRIUR3_06726 I 0.000
TRIUR3_12792 Triticum urartu TRIUR3_12792 I 0.000
TRIUR3_24203 Triticum urartu TRIUR3_24203 I 0.000
TRIUR3_29638 Triticum urartu TRIUR3_29638 I 0.000
VIT_12s0055g00420 Vitis vinifera VIT_12s0055g00420 I 0.000
VIT_13s0175g00120 Vitis vinifera VIT_13s0175g00120 I 0.000
VIT_18s0072g00470 Vitis vinifera VIT_18s0072g00470 N 0.000