CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_017605.1
(
Lotus japonicus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
LjSGA_017605.1
T259368_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.771
0.771
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_017605.1
MADS box
10
57
LVKDPNTRQVTFSKRRSGLFKKAHELSILCGSEVAIVVFSPGNKPYSF
Links
Other
MADS box
family TFs
Other
Lotus japonicus
TFs
55 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGL91
Arabidopsis thaliana
AT3G66656
D
0.771
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.771
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.708
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.771
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.708
Bostr.22252s0371
Boechera stricta
Bostr.22252s0371
I
0.771
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.771
29693.m002039
Ricinus communis
29693.m002039
I
0.708
Ca_24185
Cicer arietinum
Ca_24185
I
0.896
Ca_05023
Cicer arietinum
Ca_05023
I
0.917
TCM_029518
Theobroma cacao
TCM_029518
I
0.750
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.771
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.708
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.729
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.729
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.938
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.771
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.771
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.750
gene01788-v1.0-hybrid
Fragaria vesca
gene01788-v1.0-hybrid
I
0.708
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.750
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.729
scaffold_302326.1
Arabidopsis lyrata
scaffold_302326.1
I
0.708
Bra021910
Brassica rapa
Bra021910
I
0.729
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.854
GLYMA08G03820
Glycine max
GLYMA08G03820
I
0.812
Bo3g060720
Brassica oleracea
Bo3g060720
I
0.708
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.854
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.729
Bra001209
Brassica rapa
Bra001209
I
0.708
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.854
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.708
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.771
GLYMA08G38880
Glycine max
GLYMA08G38880
I
0.875
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.875
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.875
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.812
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.875
AGL29
Arabidopsis thaliana
AT2G34440
I
0.708
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.854
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.875
AGL62
Arabidopsis thaliana
AT5G60440
I
0.708
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.875
MDP0000120467
Malus domestica
MDP0000120467
N
0.708
chr3.CM0059.60.nd
Lotus japonicus
chr3.CM0059.60.nd
N
0.833
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.708
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.708
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.708
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.729
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.708
GLYMA08G03793
Glycine max
GLYMA08G03793
N
0.812
Cucsa.212320
Cucumis sativus
Cucsa.212320
N
0.708
Cla019897
Citrullus lanatus
Cla019897
N
0.708
MTR_8g046350
Medicago truncatula
MTR_8g046350
N
0.771
Lus10040832.g
Linum usitatissimum
Lus10040832.g
N
0.708