CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_020620.1
(
Lotus japonicus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
LjSGA_020620.1
T259371_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_020620.1
MADS box
53
100
KMTNTKNMQVTFSKRRIGLFQKANELCTLSGAEMALIVTSPSQNVFSF
Links
Other
MADS box
family TFs
Other
Lotus japonicus
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LjSGA_067087.1
Lotus japonicus
LjSGA_067087.1
N
0.750
LjT01D09.100.nd
Lotus japonicus
LjT01D09.100.nd
N
0.750
evm.TU.supercontig_106.20
Carica papaya
evm.TU.supercontig_106.20
N
0.750
Bostr.5325s0071
Boechera stricta
Bostr.5325s0071
N
0.750
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.737
chr3.CM0279.290.nc
Lotus japonicus
chr3.CM0279.290.nc
N
0.729
MTR_5g055100
Medicago truncatula
MTR_5g055100
N
0.729
Ca_04661
Cicer arietinum
Ca_04661
N
0.729
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.729
AT4G36590
Arabidopsis thaliana
AT4G36590
N
0.729
MTR_1g075600
Medicago truncatula
MTR_1g075600
N
0.729
LjSGA_082681.2
Lotus japonicus
LjSGA_082681.2
N
0.729
GLYMA20G27341
Glycine max
GLYMA20G27341
N
0.729
MTR_1g077360
Medicago truncatula
MTR_1g077360
N
0.729
LjSGA_120826.2
Lotus japonicus
LjSGA_120826.2
N
0.729
evm.TU.contig_37271
Carica papaya
evm.TU.contig_37271
N
0.708
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.708
evm.TU.contig_35751
Carica papaya
evm.TU.contig_35751
N
0.708
evm.TU.supercontig_654.6
Carica papaya
evm.TU.supercontig_654.6
N
0.708
evm.TU.contig_30689
Carica papaya
evm.TU.contig_30689
N
0.708
Thhalv10015908m.g
Eutrema salsugineum
Thhalv10015908m.g
N
0.708
gene01789-v1.0-hybrid
Fragaria vesca
gene01789-v1.0-hybrid
N
0.708
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.708
evm.TU.supercontig_347.7
Carica papaya
evm.TU.supercontig_347.7
N
0.708
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.708
MTR_3g030770
Medicago truncatula
MTR_3g030770
N
0.708
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.708
TCM_006323
Theobroma cacao
TCM_006323
N
0.708
MTR_2g085280
Medicago truncatula
MTR_2g085280
N
0.708
MTR_2g085250
Medicago truncatula
MTR_2g085250
N
0.708
GLYMA20G27320
Glycine max
GLYMA20G27320
N
0.708
MTR_1g108510
Medicago truncatula
MTR_1g108510
N
0.708
Ca_04659
Cicer arietinum
Ca_04659
N
0.708
Ca_04660
Cicer arietinum
Ca_04660
N
0.708
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.708
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.708
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.708
Pm021071
Prunus mume
Pm021071
N
0.708
Ca_04665
Cicer arietinum
Ca_04665
N
0.708
Cla006571
Citrullus lanatus
Cla006571
N
0.708
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.708