CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_104570.1
(
Lotus japonicus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
LjSGA_104570.1
T259401_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.828
0.828
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_104570.1
MADS box
21
53
IRKKGLIKKVDELSTLCGIEACAIIYSPFEPST
Links
Other
MADS box
family TFs
Other
Lotus japonicus
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_026842
Theobroma cacao
TCM_026842
I
0.862
Thhalv10022373m.g
Eutrema salsugineum
Thhalv10022373m.g
I
0.862
Bra029469
Brassica rapa
Bra029469
I
0.862
Bo9g078450
Brassica oleracea
Bo9g078450
I
0.862
chr6.LjT19B22.120.nd
Lotus japonicus
chr6.LjT19B22.120.nd
I
0.862
Thhalv10012000m.g
Eutrema salsugineum
Thhalv10012000m.g
I
0.828
SapurV1A.0066s0310
Salix purpurea
SapurV1A.0066s0310
I
0.828
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.828
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.828
TCM_042799
Theobroma cacao
TCM_042799
I
0.793
VIT_14s0060g00300
Vitis vinifera
VIT_14s0060g00300
I
0.793
evm.TU.contig_28448.1
Carica papaya
evm.TU.contig_28448.1
N
0.793
Bostr.2392s0039
Boechera stricta
Bostr.2392s0039
I
0.793
Thhalv10027038m.g
Eutrema salsugineum
Thhalv10027038m.g
I
0.793
Bo5g145000
Brassica oleracea
Bo5g145000
I
0.793
POPTR_0005s00420
Populus trichocarpa
POPTR_0005s00420
I
0.793
Thhalv10024162m.g
Eutrema salsugineum
Thhalv10024162m.g
I
0.793
Al_scaffold_0003_569
Arabidopsis lyrata
Al_scaffold_0003_569
I
0.759
gene22916-v1.0-hybrid
Fragaria vesca
gene22916-v1.0-hybrid
I
0.759
Thhalv10019758m.g
Eutrema salsugineum
Thhalv10019758m.g
N
0.759
MDP0000925348
Malus domestica
MDP0000925348
I
0.759
Thhalv10019681m.g
Eutrema salsugineum
Thhalv10019681m.g
I
0.759
Lus10014578.g
Linum usitatissimum
Lus10014578.g
I
0.759
Eucgr.E01736
Eucalyptus grandis
Eucgr.E01736
I
0.759
TCM_026845
Theobroma cacao
TCM_026845
I
0.759
TCM_025671
Theobroma cacao
TCM_025671
I
0.759
MTR_4g032290
Medicago truncatula
MTR_4g032290
N
0.759
AT3G05860
Arabidopsis thaliana
AT3G05860
I
0.759
Cla009163
Citrullus lanatus
Cla009163
I
0.759
TCM_042848
Theobroma cacao
TCM_042848
N
0.759
Aquca_007_00647
Aquilegia coerulea
Aquca_007_00647
I
0.759
Thhalv10019833m.g
Eutrema salsugineum
Thhalv10019833m.g
I
0.724
evm.TU.contig_28448.4
Carica papaya
evm.TU.contig_28448.4
I
0.724
MTR_4g031910
Medicago truncatula
MTR_4g031910
N
0.724
GLYMA03G19880
Glycine max
GLYMA03G19880
N
0.724
LjT40B16.70.nc
Lotus japonicus
LjT40B16.70.nc
I
0.724
evm.TU.supercontig_30.166
Carica papaya
evm.TU.supercontig_30.166
I
0.724
MTR_3g466980
Medicago truncatula
MTR_3g466980
N
0.724
evm.TU.contig_40499.2
Carica papaya
evm.TU.contig_40499.2
I
0.724
evm.TU.supercontig_265.6
Carica papaya
evm.TU.supercontig_265.6
N
0.724
Gorai.013G210700
Gossypium raimondii
Gorai.013G210700
N
0.724
Cucsa.224270
Cucumis sativus
Cucsa.224270
I
0.724
Lus10032108.g
Linum usitatissimum
Lus10032108.g
I
0.724
evm.TU.contig_24608
Carica papaya
evm.TU.contig_24608
I
0.724
Thhalv10002349m.g
Eutrema salsugineum
Thhalv10002349m.g
I
0.724
evm.TU.supercontig_117.19
Carica papaya
evm.TU.supercontig_117.19
I
0.724
MTR_7g055800
Medicago truncatula
MTR_7g055800
N
0.708