PDK_20s1352301g001 (Phoenix dactylifera)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 PDK_20s1352301g001 T259445_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.809 0.809
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1352301g001 MADS box 10 56

Links

Other MADS box family TFs
Other Phoenix dactylifera TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL65 Arabidopsis thaliana AT1G18750 D 0.792
Ca_16376 Cicer arietinum Ca_16376 I 0.783
mgf000945m Mimulus guttatus mgf000945m I 0.792
mgf004425m Mimulus guttatus mgf004425m I 0.792
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.936
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.745
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.717
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.792
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.745
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.787
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.787
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.745
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.812
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.848
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.745
Ca_18082 Cicer arietinum Ca_18082 I 0.787
Cla010361 Citrullus lanatus Cla010361 I 0.851
Cla018884 Citrullus lanatus Cla018884 I 0.745
Pm006479 Prunus mume Pm006479 I 0.787
Pm024895 Prunus mume Pm024895 I 0.766
29813.m001508 Ricinus communis 29813.m001508 I 0.826
30138.m004061 Ricinus communis 30138.m004061 I 0.854
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.787
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.787
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.851
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.872
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.787
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.833
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.787
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.787
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.872
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.872
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.766
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.761
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.830
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.809
PK03147.1 Cannabis sativa PK03147.1 I 0.787
PK21701.1 Cannabis sativa PK21701.1 I 0.833
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.830
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.804
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.812
MDP0000919323 Malus domestica MDP0000919323 I 0.766
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.854
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.854
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.875
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.787
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.787
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.851
MDP0000146231 Malus domestica MDP0000146231 I 0.809
MDP0000146415 Malus domestica MDP0000146415 I 0.766
MDP0000147667 Malus domestica MDP0000147667 I 0.787
MDP0000193129 Malus domestica MDP0000193129 I 0.766
MDP0000773068 Malus domestica MDP0000773068 I 0.766
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.915
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.830
F775_13266 Aegilops tauschii F775_13266 I 0.891
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.809
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.809
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.851
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.787
Bo8g068060 Brassica oleracea Bo8g068060 I 0.851
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.851
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.787
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.830
Bra031049 Brassica rapa Bra031049 I 0.851
Bra025685 Brassica rapa Bra025685 I 0.851
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.745
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.894
AGL30 Arabidopsis thaliana AT2G03060 I 0.761
Bo7g080890 Brassica oleracea Bo7g080890 I 0.723
Bo8g104060 Brassica oleracea Bo8g104060 I 0.851
Bra016544 Brassica rapa Bra016544 I 0.851
Bra017404 Brassica rapa Bra017404 I 0.739
Bra024792 Brassica rapa Bra024792 I 0.723
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.830
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.833
TCM_011687 Theobroma cacao TCM_011687 I 0.804
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.787
TCM_014051 Theobroma cacao TCM_014051 I 0.894
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.935
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.891
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.787
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.891
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.766
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.891
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.891
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.766
Si028357m.g Setaria italica Si028357m.g N 0.809
Bo9g072860 Brassica oleracea Bo9g072860 N 0.745
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.783
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.848
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.804
AGL94 Arabidopsis thaliana AT1G69540 N 0.702
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.745
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.766
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.804
OBART11G21780 Oryza barthii OBART11G21780 N 0.809
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.766
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.702
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.809
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.723
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.830
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.809
OS11G0658700 Oryza sativa OS11G0658700 N 0.809
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.723
GSMUA_Achr11G14240_001 Musa acuminata GSMUA_Achr11G14240_001 N 0.739
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.745
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.783
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.717
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.723
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.761
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.848