ECPE_0001369301 (Echinostoma caproni)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 ECPE_0001369301 T259562_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.750 0.750
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.750 0.750
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.750 0.750
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.750 0.750
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.750 0.750
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.750 0.750
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.750 0.750
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.750 0.750
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.750 0.750
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.750 0.750
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.750 0.750
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.750 0.750
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.750 0.750
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.750 0.750
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.750 0.750
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.750 0.750
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.750 0.750
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.750 0.750
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.750 0.750
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.750 0.750
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.750 0.750
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.750 0.750
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.729 0.729
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.708 0.708
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ECPE_0001369301-mRNA-1 MADS box 91 138

Links

Other MADS box family TFs
Other Echinostoma caproni TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Smp_097730 Schistosoma mansoni Smp_097730 I 0.833
SCUD_0000460501 Schistosoma curassoni SCUD_0000460501 I 0.833
SMRZ_0002507801 Schistosoma margrebowiei SMRZ_0002507801 I 0.833
Sjc_0026780 Schistosoma japonicum Sjc_0026780 I 0.833
SMTD_0001950801 Schistosoma mattheei SMTD_0001950801 I 0.833
A_01192 Schistosoma haematobium A_01192 I 0.833
TTAC_0000870401 Hydatigera taeniaeformis TTAC_0000870401 I 0.812
ECANG7_07506 Echinococcus canadensis ECANG7_07506 I 0.812
EmuJ_000377500 Echinococcus multilocularis EmuJ_000377500 I 0.812
HDID_0000576901 Hymenolepis diminuta HDID_0000576901 I 0.812
HmN_000858800 Hymenolepis microstoma HmN_000858800 I 0.812
HNAJ_0000775201 Hymenolepis nana HNAJ_0000775201 I 0.812
TsM_000925700 Taenia solium TsM_000925700 I 0.812
SROB_0002013401 Schistosoma rodhaini SROB_0002013401 I 0.812
MCOS_0000609801 Mesocestoides corti MCOS_0000609801 I 0.812
TASK_0000457101 Taenia asiatica TASK_0000457101 I 0.812
T265_07052 Opisthorchis viverrini T265_07052 N 0.792
csin112160 Clonorchis sinensis csin112160 N 0.792
SRF Gorilla gorilla ENSGGOG00000006293 I 0.769
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I 0.769
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I 0.769
SRF Vicugna pacos ENSVPAG00000008912 I 0.769
Brh_R011000 Buceros rhinoceros Brh_R011000 I 0.769
Pvit_03053 Pogona vitticeps Pvit_03053 I 0.750
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.750
ENSBTAP00000016981-D1 Bos grunniens ENSBTAP00000016981-D1 I 0.750
ENSPANG00000006410 Papio anubis ENSPANG00000006410 I 0.750
ENSPFOG00000022718 Poecilia formosa ENSPFOG00000022718 I 0.750
SRF Oryzias latipes ENSORLG00000013036 I 0.750
SRF Otolemur garnettii ENSOGAG00000029623 I 0.750
SRF Oryctolagus cuniculus ENSOCUG00000002892 I 0.750
ENSONIG00000010161 Oreochromis niloticus ENSONIG00000010161 I 0.750
ENSONIG00000010505 Oreochromis niloticus ENSONIG00000010505 I 0.750
SMU15039528 Schmidtea mediterranea SMU15039528 N 0.750
ENSPPYG00000016633 Pongo abelii ENSPPYG00000016633 I 0.750
SRF Pan troglodytes ENSPTRG00000018189 I 0.750
srf Xenopus tropicalis XB-GENE-482036 I 0.750
SRF Tursiops truncatus ENSTTRG00000007017 I 0.750
ENSXMAG00000006964 Xiphophorus maculatus ENSXMAG00000006964 I 0.750
ENSNLEG00000004203 Nomascus leucogenys ENSNLEG00000004203 I 0.750
HelroG137972 Helobdella robusta HelroG137972 I 0.750
SRF Takifugu rubripes ENSTRUG00000017531 I 0.750
srfa Takifugu rubripes ENSTRUG00000011448 I 0.750
Srf Rattus norvegicus ENSRNOG00000018232 I 0.750
SRF Pteropus vampyrus ENSPVAG00000008728 I 0.750
SRF Sus scrofa ENSSSCG00000001661 I 0.750
ENSSTOG00000014222 Ictidomys tridecemlineatus ENSSTOG00000014222 I 0.750
srfa Tetraodon nigroviridis ENSTNIG00000002923 I 0.750
srf.L Xenopus laevis XB-GENE-864819 I 0.750
SRF Tetraodon nigroviridis ENSTNIG00000013420 I 0.750
ENSAMEG00000012452 Ailuropoda melanoleuca ENSAMEG00000012452 I 0.750
srfb Danio rerio ENSDARG00000102867 I 0.750
SRF Dasypus novemcinctus ENSDNOG00000014133 I 0.750
SRF Equus caballus ENSECAG00000009068 I 0.750
SRF Anolis carolinensis ENSACAG00000004798 I 0.750
Srf Mus musculus ENSMUSG00000015605 D 0.750
srfa Danio rerio ENSDARG00000053918 I 0.750
SRF Callithrix jacchus ENSCJAG00000005223 I 0.750
SRF Bos taurus ENSBTAG00000012777 I 0.750
ENSAMXG00000003129 Astyanax mexicanus ENSAMXG00000003129 I 0.750
ENSCSAG00000011622 Chlorocebus sabaeus ENSCSAG00000011622 I 0.750
ENSAMXG00000001100 Astyanax mexicanus ENSAMXG00000001100 I 0.750
SRF Canis familiaris ENSCAFG00000001829 I 0.750
SRF Felis catus ENSFCAG00000025180 I 0.750
ENSMPUG00000013090 Mustela putorius furo ENSMPUG00000013090 I 0.750
ENSLOCG00000015887 Lepisosteus oculatus ENSLOCG00000015887 I 0.750
ENSMICG00000008327 Microcebus murinus ENSMICG00000008327 I 0.750
SRF Monodelphis domestica ENSMODG00000018981 I 0.750
ENSLACG00000014404 Latimeria chalumnae ENSLACG00000014404 I 0.750
ENSGMOG00000008883 Gadus morhua ENSGMOG00000008883 I 0.750
SRF Homo sapiens ENSG00000112658 D 0.750
SRF Gasterosteus aculeatus ENSGACG00000003778 I 0.750
srfa Gasterosteus aculeatus ENSGACG00000020002 I 0.750
SRF Macaca mulatta ENSMMUG00000000033 I 0.750
Afo_R000461 Aptenodytes forsteri Afo_R000461 I 0.741
Aan_R005414 Calypte anna Aan_R005414 I 0.741
Gfo_R009695 Geospiza fortis Gfo_R009695 I 0.741
MESCA001358 Megaselia scalaris MESCA001358 I 0.741
SRF Loxodonta africana ENSLAFG00000010278 I 0.741
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I 0.741
SRF Cavia porcellus ENSCPOG00000022327 I 0.741
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I 0.741
SRF Taeniopygia guttata ENSTGUG00000004738 I 0.741
SRF Sorex araneus ENSSARG00000003401 I 0.731
CapteG221100 Capitella teleta CapteG221100 I 0.729
CGI_10019446 Crassostrea gigas CGI_10019446 I 0.729
D918_07967 Trichuris suis D918_07967 I 0.729
srfA Dictyostelium discoideum DDB_G0281387 D 0.729
SMAR003014 Strigamia maritima SMAR003014 I 0.729
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.729
D917_02561 Trichinella nativa D917_02561 I 0.729
estExt_fgeneshDP_kg.C_1450001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_1450001 I 0.729
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.729
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.729
XP_002156545.1 Hydra magnipapillata XP_002156545.1 I 0.729
XP_002164692.1 Hydra magnipapillata XP_002164692.1 I 0.729
EFA85834.1 Polysphondylium pallidum EFA85834.1 I 0.729
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.729
estExt_fgeneshNG_pg.C_520029 Naegleria gruberi estExt_fgeneshNG_pg.C_520029 I 0.729
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.729
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.729
Ocbimv22020285m.g Octopus bimaculoides Ocbimv22020285m.g I 0.729
SSLN_0001407901 Schistocephalus solidus SSLN_0001407901 N 0.729
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I 0.729
CAOG_01457 Capsaspora owczarzaki CAOG_01457 I 0.729
SPER_0002407601 Spirometra erinaceieuropaei SPER_0002407601 N 0.729
BGLB003854 Biomphalaria glabrata BGLB003854 I 0.729
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.729
SPER_0003232401 Spirometra erinaceieuropaei SPER_0003232401 N 0.729
ISCW019966 Ixodes scapularis ISCW019966 I 0.729
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.729
ML154140a Mnemiopsis leidyi ML154140a I 0.729
LotgiG59850 Lottia gigantea LotgiG59850 I 0.729
NEMVEDRAFT_v1g164599 Nematostella vectensis NEMVEDRAFT_v1g164599 I 0.729
srf Ciona intestinalis ENSCING00000018042 I 0.729
EFV60876 Trichinella spiralis EFV60876 I 0.729
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.724
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.724
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.724
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.724
O9G_005180 Rozella allomycis O9G_005180 I 0.714
Myotis_brandtii_SRF_10026135 Myotis brandtii Myotis_brandtii_SRF_10026135 I 0.710
MDOA002443 Musca domestica MDOA002443 I 0.708
PTRK_0001139200 Parastrongyloides trichosuri PTRK_0001139200 I 0.708
TCLT_0000849901 Thelazia callipaeda TCLT_0000849901 I 0.708
nOo.2.0.1.g11137 Onchocerca ochengi nOo.2.0.1.g11137 I 0.708
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I 0.708
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.708
ASIM_0002132201 Anisakis simplex ASIM_0002132201 I 0.708
BTMF_0000835601 Brugia timori BTMF_0000835601 I 0.708
ASU_14961 Ascaris suum ASU_14961 I 0.708
DME_0000010001 Dracunculus medinensis DME_0000010001 I 0.708
SPAL_0000748100 Strongyloides papillosus SPAL_0000748100 I 0.708
GPUH_0001673101 Gongylonema pulchrum GPUH_0001673101 I 0.708
SSTP_0000932200 Strongyloides stercoralis SSTP_0000932200 I 0.708
ASU_11865 Ascaris suum ASU_11865 I 0.708
nDi.2.2.2.g03920 Dirofilaria immitis nDi.2.2.2.g03920 I 0.708
SVE_1017000 Strongyloides venezuelensis SVE_1017000 I 0.708
EEL_0000867301 Elaeophora elaphi EEL_0000867301 I 0.708
nAv.1.0.1.g08666 Acanthocheilonema viteae nAv.1.0.1.g08666 I 0.708
nLs.2.1.2.g09548 Litomosoides sigmodontis nLs.2.1.2.g09548 I 0.708
LOAG_01601 Loa loa LOAG_01601 I 0.708
GI21322 Drosophila mojavensis FBgn0144052 I 0.708
GH20989 Drosophila grimshawi FBgn0128451 I 0.708
GG22961 Drosophila erecta FBgn0115118 I 0.708
GF11392 Drosophila ananassae FBgn0088432 I 0.708
GL20046 Drosophila persimilis FBgn0157643 I 0.708
GM11854 Drosophila sechellia FBgn0166795 I 0.708
GK22205 Drosophila willistoni FBgn0224190 I 0.708
GJ21595 Drosophila virilis FBgn0208714 I 0.708
GD11852 Drosophila simulans FBgn0183591 I 0.708
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.708
bs Drosophila melanogaster FBgn0004101 D 0.708
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.708
ACEP12187 Atta cephalotes ACEP12187 I 0.708
WUBG_06152 Wuchereria bancrofti WUBG_06152 I 0.708
SPPG_06208 Spizellomyces punctatus SPPG_06208 I 0.708
BATDEDRAFT_7506 Batrachochytrium dendrobatidis BATDEDRAFT_7506 I 0.708
Bm3022 Brugia malayi Bm3022 I 0.708
SRF Procavia capensis ENSPCAG00000009376 I 0.708
srfB Dictyostelium discoideum DDB_G0282835 I 0.708
Bm7708 Brugia malayi Bm7708 I 0.708
GE14398 Drosophila yakuba FBgn0232006 I 0.708
GB47234 Apis mellifera GB47234 I 0.708
sr10299 Sporisorium reilianum sr10299 I 0.708
PSEUBRA_SCAF3g03688 Pseudozyma brasiliensis PSEUBRA_SCAF3g03688 I 0.708
UM01224 Ustilago maydis UM01224 I 0.708
WBGene00243571 Onchocerca volvulus WBGene00243571 I 0.708
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.708
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.708
Ppa-unc-120 Pristionchus pacificus PPA14131 I 0.708
TC004911 Tribolium castaneum TC004911 I 0.708
NV18787 Nasonia vitripennis NV18787 I 0.708
PHSY_004604 Pseudozyma hubeiensis PHSY_004604 I 0.708
K437DRAFT_219345 Tilletiaria anomala K437DRAFT_219345 I 0.708
PaG_04862 Pseudozyma aphidis PaG_04862 I 0.708
L798_08800 Zootermopsis nevadensis L798_08800 I 0.708
PFL1_02964 Pseudozyma flocculosa PFL1_02964 I 0.708
ADAC008363 Anopheles darlingi ADAC008363 I 0.704
ACHR000964 Anopheles christyi ACHR000964 I 0.704
AFUN006147 Anopheles funestus AFUN006147 I 0.704
ASTEI07120 Anopheles stephensi ASTEI07120 I 0.704
ASIS007770 Anopheles sinensis ASIS007770 I 0.704
ADIR000346 Anopheles dirus ADIR000346 I 0.704
SINV23954 Solenopsis invicta SINV23954 I 0.704
ARB_02013 Arthroderma benhamiae ARB_02013 I 0.703
TRV_05844 Trichophyton verrucosum TRV_05844 I 0.703
ENSP00000265354 Macaca fascicularis ENSP00000265354 I 0.700