MhA1_Contig1835.frz3.fgene2 (Meloidogyne hapla)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MhA1_Contig1835.frz3.fgene2 T259605_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.842 0.842
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.842 0.842
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.842 0.842
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.816 0.816
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.816 0.816
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.816 0.816
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.816 0.816
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.816 0.816
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.816 0.816
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.816 0.816
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.816 0.816
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.816 0.816
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.816 0.816
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.816 0.816
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.816 0.816
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.816 0.816
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.816 0.816
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.816 0.816
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.816 0.816
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.816 0.816
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.816 0.816
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.816 0.816
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.816 0.816
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.816 0.816
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MhA1_Contig1835.frz3.fgene2 MADS box 54 91

Links

Other MADS box family TFs
Other Meloidogyne hapla TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CPIJ016459 Culex quinquefasciatus CPIJ016459 I 0.913
CpipJ_CPIJ016459 Culex pipiens CpipJ_CPIJ016459 I 0.913
DICVIV_07203 Dictyocaulus viviparus DICVIV_07203 I 0.868
BTMF_0000835601 Brugia timori BTMF_0000835601 I 0.868
DME_0000010001 Dracunculus medinensis DME_0000010001 I 0.868
GPUH_0001673101 Gongylonema pulchrum GPUH_0001673101 I 0.868
HPBE_0000920601 Heligmosomoides bakeri HPBE_0000920601 I 0.868
HCOI01934200 Haemonchus contortus HCOI01934200 I 0.868
ASU_14961 Ascaris suum ASU_14961 I 0.868
EEL_0000867301 Elaeophora elaphi EEL_0000867301 I 0.868
ANCCEY_13649 Ancylostoma ceylanicum ANCCEY_13649 I 0.868
WBGene00243571 Onchocerca volvulus WBGene00243571 I 0.868
LOAG_01601 Loa loa LOAG_01601 I 0.868
ACAC_0000939001 Angiostrongylus cantonensis ACAC_0000939001 I 0.868
ACOC_0000094701 Angiostrongylus costaricensis ACOC_0000094701 I 0.868
ANCCEY_11374 Ancylostoma ceylanicum ANCCEY_11374 I 0.868
ANCCAN_16750 Ancylostoma caninum ANCCAN_16750 I 0.868
ASIM_0002132201 Anisakis simplex ASIM_0002132201 I 0.868
ASU_11865 Ascaris suum ASU_11865 I 0.868
SPAL_0000748100 Strongyloides papillosus SPAL_0000748100 I 0.868
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I 0.868
PTRK_0001139200 Parastrongyloides trichosuri PTRK_0001139200 I 0.868
nAv.1.0.1.g08666 Acanthocheilonema viteae nAv.1.0.1.g08666 I 0.868
SSTP_0000932200 Strongyloides stercoralis SSTP_0000932200 I 0.868
TCLT_0000849901 Thelazia callipaeda TCLT_0000849901 I 0.868
SVE_1017000 Strongyloides venezuelensis SVE_1017000 I 0.868
OESDEN_12192 Oesophagostomum dentatum OESDEN_12192 I 0.868
WUBG_06152 Wuchereria bancrofti WUBG_06152 I 0.868
nLs.2.1.2.g09548 Litomosoides sigmodontis nLs.2.1.2.g09548 I 0.868
NECAME_15797 Necator americanus NECAME_15797 I 0.868
nOo.2.0.1.g11137 Onchocerca ochengi nOo.2.0.1.g11137 I 0.868
nDi.2.2.2.g03920 Dirofilaria immitis nDi.2.2.2.g03920 I 0.868
Bm7708 Brugia malayi Bm7708 I 0.868
NBR_0001475101 Nippostrongylus brasiliensis NBR_0001475101 I 0.868
Bm3022 Brugia malayi Bm3022 I 0.868
GD11852 Drosophila simulans FBgn0183591 I 0.842
GJ21595 Drosophila virilis FBgn0208714 I 0.842
GM11854 Drosophila sechellia FBgn0166795 I 0.842
GK22205 Drosophila willistoni FBgn0224190 I 0.842
GI21322 Drosophila mojavensis FBgn0144052 I 0.842
GE14398 Drosophila yakuba FBgn0232006 I 0.842
GF11392 Drosophila ananassae FBgn0088432 I 0.842
GG22961 Drosophila erecta FBgn0115118 I 0.842
GH20989 Drosophila grimshawi FBgn0128451 I 0.842
GA17433 Drosophila pseudoobscura FBgn0077446 I 0.842
GL20046 Drosophila persimilis FBgn0157643 I 0.842
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I 0.842
MDOA002443 Musca domestica MDOA002443 I 0.842
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I 0.842
scaffold2825-EXSNAP2012.1 Pristionchus exspectatus scaffold2825-EXSNAP2012.1 I 0.842
bs Drosophila melanogaster FBgn0004101 D 0.842
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I 0.842
unc-120 Caenorhabditis elegans WBGene00006844 D 0.842
NV18787 Nasonia vitripennis NV18787 I 0.842
Ppa-unc-120 Pristionchus pacificus PPA14131 I 0.842
TC004911 Tribolium castaneum TC004911 I 0.842
L798_08800 Zootermopsis nevadensis L798_08800 I 0.842
GB47234 Apis mellifera GB47234 I 0.842
CBG12542 Caenorhabditis briggsae CBG12542 I 0.842
CBN00046 Caenorhabditis brenneri CBN00046 I 0.842
CBN02826 Caenorhabditis brenneri CBN02826 I 0.842
CRE29464 Caenorhabditis remanei CRE29464 I 0.842
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I 0.842
CJA08385 Caenorhabditis japonica CJA08385 I 0.842
ACEP12187 Atta cephalotes ACEP12187 I 0.842
XP_002156545.1 Hydra magnipapillata XP_002156545.1 I 0.816
srf.L Xenopus laevis XB-GENE-864819 I 0.816
srf Xenopus tropicalis XB-GENE-482036 I 0.816
XP_002164692.1 Hydra magnipapillata XP_002164692.1 I 0.816
srfb Danio rerio ENSDARG00000102867 I 0.816
ENSCSAG00000011622 Chlorocebus sabaeus ENSCSAG00000011622 I 0.816
srfa Danio rerio ENSDARG00000053918 I 0.816
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I 0.816
BGLB003854 Biomphalaria glabrata BGLB003854 I 0.816
Ocbimv22020285m.g Octopus bimaculoides Ocbimv22020285m.g I 0.816
SRF Equus caballus ENSECAG00000009068 I 0.816
ENSBTAP00000016981-D1 Bos grunniens ENSBTAP00000016981-D1 I 0.816
Pvit_03053 Pogona vitticeps Pvit_03053 I 0.816
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I 0.816
SRF Callithrix jacchus ENSCJAG00000005223 I 0.816
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I 0.816
SRF Felis catus ENSFCAG00000025180 I 0.816
SRF Dasypus novemcinctus ENSDNOG00000014133 I 0.816
ENSAMXG00000001100 Astyanax mexicanus ENSAMXG00000001100 I 0.816
CapteG221100 Capitella teleta CapteG221100 I 0.816
CGI_10019446 Crassostrea gigas CGI_10019446 I 0.816
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I 0.816
Aqu1.224560 Amphimedon queenslandica Aqu1.224560 I 0.816
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I 0.816
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I 0.816
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I 0.816
EVEC_0001294401 Enterobius vermicularis EVEC_0001294401 N 0.816
EFV60876 Trichinella spiralis EFV60876 I 0.816
SRF Homo sapiens ENSG00000112658 D 0.816
ENSAMXG00000003129 Astyanax mexicanus ENSAMXG00000003129 I 0.816
SRF Bos taurus ENSBTAG00000012777 I 0.816
D917_02561 Trichinella nativa D917_02561 I 0.816
D918_07967 Trichuris suis D918_07967 I 0.816
SRF Anolis carolinensis ENSACAG00000004798 I 0.816
ENSAMEG00000012452 Ailuropoda melanoleuca ENSAMEG00000012452 I 0.816
SRF Canis familiaris ENSCAFG00000001829 I 0.816
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I 0.816
ENSONIG00000010505 Oreochromis niloticus ENSONIG00000010505 I 0.816
ENSONIG00000010161 Oreochromis niloticus ENSONIG00000010161 I 0.816
SRF Oryzias latipes ENSORLG00000013036 I 0.816
ENSPANG00000006410 Papio anubis ENSPANG00000006410 I 0.816
ENSXMAG00000006964 Xiphophorus maculatus ENSXMAG00000006964 I 0.816
SRF Otolemur garnettii ENSOGAG00000029623 I 0.816
SRF Oryctolagus cuniculus ENSOCUG00000002892 I 0.816
SRF Macaca mulatta ENSMMUG00000000033 I 0.816
SRF Monodelphis domestica ENSMODG00000018981 I 0.816
ENSMPUG00000013090 Mustela putorius furo ENSMPUG00000013090 I 0.816
ENSNLEG00000004203 Nomascus leucogenys ENSNLEG00000004203 I 0.816
SRF Tursiops truncatus ENSTTRG00000007017 I 0.816
SRF Takifugu rubripes ENSTRUG00000017531 I 0.816
SRF Pteropus vampyrus ENSPVAG00000008728 I 0.816
SRF Pan troglodytes ENSPTRG00000018189 I 0.816
ENSPPYG00000016633 Pongo abelii ENSPPYG00000016633 I 0.816
ENSPFOG00000022718 Poecilia formosa ENSPFOG00000022718 I 0.816
Srf Rattus norvegicus ENSRNOG00000018232 I 0.816
SRF Sus scrofa ENSSSCG00000001661 I 0.816
srfa Takifugu rubripes ENSTRUG00000011448 I 0.816
SRF Tetraodon nigroviridis ENSTNIG00000013420 I 0.816
srfa Tetraodon nigroviridis ENSTNIG00000002923 I 0.816
ENSSTOG00000014222 Ictidomys tridecemlineatus ENSSTOG00000014222 I 0.816
ENSMICG00000008327 Microcebus murinus ENSMICG00000008327 I 0.816
Srf Mus musculus ENSMUSG00000015605 D 0.816
LotgiG59850 Lottia gigantea LotgiG59850 I 0.816
srfa Gasterosteus aculeatus ENSGACG00000020002 I 0.816
ENSGMOG00000008883 Gadus morhua ENSGMOG00000008883 I 0.816
ML154140a Mnemiopsis leidyi ML154140a I 0.816
NEMVEDRAFT_v1g164599 Nematostella vectensis NEMVEDRAFT_v1g164599 I 0.816
ENSLOCG00000015887 Lepisosteus oculatus ENSLOCG00000015887 I 0.816
ENSLACG00000014404 Latimeria chalumnae ENSLACG00000014404 I 0.816
SRF Gasterosteus aculeatus ENSGACG00000003778 I 0.816
ISCW019966 Ixodes scapularis ISCW019966 I 0.816
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I 0.816
SMAR003014 Strigamia maritima SMAR003014 I 0.816
RPRC001752 Rhodnius prolixus RPRC001752 I 0.815
L892_g14520 Steinernema scapterisci L892_g14520 I 0.789
L893_g14743 Steinernema glaseri L893_g14743 I 0.789
L898_g9834 Steinernema monticolum L898_g9834 I 0.789
L596_g5274 Steinernema carpocapsae L596_g5274 I 0.789
L889_g24087 Steinernema feltiae L889_g24087 I 0.789
srf Ciona intestinalis ENSCING00000018042 I 0.763
tetur02g05030 Tetranychus urticae tetur02g05030 I 0.763
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I 0.763
SRF Procavia capensis ENSPCAG00000009376 I 0.737
KAFR_0B05280 Kazachstania africana KAFR_0B05280 I 0.711
e_gw1.1.687.1 Phycomyces blakesleeanus e_gw1.1.687.1 I 0.711
SPPG_06208 Spizellomyces punctatus SPPG_06208 I 0.711
RO3G_15079 Rhizopus oryzae RO3G_15079 I 0.711
GLOINDRAFT_82941 Rhizophagus irregularis GLOINDRAFT_82941 I 0.711
RO3G_00948 Rhizopus oryzae RO3G_00948 I 0.711
RO3G_06121 Rhizopus oryzae RO3G_06121 I 0.711
RO3G_11614 Rhizopus oryzae RO3G_11614 I 0.711
e_gw1.2.1101.1 Mucor circinelloides e_gw1.2.1101.1 I 0.711
e_gw1.4.1161.1 Mucor circinelloides e_gw1.4.1161.1 I 0.711
gw1.3.516.1 Phycomyces blakesleeanus gw1.3.516.1 I 0.711
HelroG137972 Helobdella robusta HelroG137972 I 0.711
srfB Dictyostelium discoideum DDB_G0282835 I 0.711
gw1.27.105.1 Phycomyces blakesleeanus gw1.27.105.1 I 0.711
gw1.5.917.1 Mucor circinelloides gw1.5.917.1 I 0.711
gw1.8.565.1 Mucor circinelloides gw1.8.565.1 I 0.711
e_gw1.6.1281.1 Mucor circinelloides e_gw1.6.1281.1 I 0.711
estExt_fgeneshMC_pm.C_40429 Mucor circinelloides estExt_fgeneshMC_pm.C_40429 I 0.711
EFA77376.1 Polysphondylium pallidum EFA77376.1 I 0.711
fgeneshPB_pg.1__662 Phycomyces blakesleeanus fgeneshPB_pg.1__662 I 0.711
BATDEDRAFT_7506 Batrachochytrium dendrobatidis BATDEDRAFT_7506 I 0.711