Bra016665 (Brassica rapa)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01429 (MBD) IPR001739 Bra016665 T259951_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016665.1-P MBD 4 77

Links

Other MBD family TFs
Other Brassica rapa TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.730
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.857
Ciclev10025929m.g Citrus clementina Ciclev10025929m.g N 0.703
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.724
Carubv10009517m.g Capsella rubella Carubv10009517m.g N 0.919
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N 0.919
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N 0.919
Bostr.28625s0113 Boechera stricta Bostr.28625s0113 N 0.730
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.753
Cucsa.105420 Cucumis sativus Cucsa.105420 N 0.712
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.770
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N 0.757
29841.m002855 Ricinus communis 29841.m002855 N 0.770
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.703
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N 0.730
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N 0.763
PK24888.1 Cannabis sativa PK24888.1 N 0.797
PK04144.1 Cannabis sativa PK04144.1 N 0.743
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N 0.973
orange1.1g022816m.g Citrus sinensis orange1.1g022816m.g N 0.712
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.716
MDP0000574053 Malus domestica MDP0000574053 N 0.716
MDP0000375866 Malus domestica MDP0000375866 N 0.730
MDP0000301302 Malus domestica MDP0000301302 N 0.724
MDP0000248422 Malus domestica MDP0000248422 N 0.703
MDP0000152128 Malus domestica MDP0000152128 N 0.716
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.784
Pm027560 Prunus mume Pm027560 N 0.712
Cla012920 Citrullus lanatus Cla012920 N 0.757
Ca_19192 Cicer arietinum Ca_19192 N 0.797
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.716
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.730
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.730
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.753
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N 0.959
Bra027207 Brassica rapa Bra027207 N 0.743
Bra026773 Brassica rapa Bra026773 N 0.792
Bra021136 Brassica rapa Bra021136 N 0.730
Bo8g106130 Brassica oleracea Bo8g106130 N 0.838
Bo8g066360 Brassica oleracea Bo8g066360 N 1.000
Bo5g020780 Brassica oleracea Bo5g020780 N 0.750
MBD11 Arabidopsis thaliana AT3G15790 N 0.753
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.730
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.781
Ca_06682 Cicer arietinum Ca_06682 N 0.740
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.806
TCM_038107 Theobroma cacao TCM_038107 N 0.703
TCM_027169 Theobroma cacao TCM_027169 N 0.764
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.703
Solyc06g068140.2 Solanum lycopersicum Solyc06g068140.2 N 0.726
MBD11 Arabidopsis lyrata scaffold_301848.1 N 0.781
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.730
POPTR_0006s06690 Populus trichocarpa POPTR_0006s06690 N 0.750
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.703
MTR_4g010210 Medicago truncatula MTR_4g010210 N 0.707
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.808
MBD10 Arabidopsis thaliana AT1G15340 N 0.973