CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mbd3b
(
Danio rerio
)
MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01429 (MBD)
IPR001739
ENSDARG00000042029
T260103_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MBD2
M09256_2.00
Homo sapiens
VSGKCCGGMKR
YMKCCGGMCSB
Misc
Kulakovskiy et al.(2013)
MBD2_HUMAN.H11MO.0.B
0.792
0.792
Mbd2
M09258_2.00
Mus musculus
VSGKCCGGMKR
YMKCCGGMCSB
Misc
Kulakovskiy et al.(2013)
MBD2_MOUSE.H11MO.0.B
0.779
0.779
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000048774
MBD
4
48
NDPTGKKFRSKPQLARSLGNSMDLSSFDFRTGKMLMSKLNKNRQR
ENSDARP00000048774
MBD
40
114
SKLNKNRQRPRYDNNSQSKGKPDLNTSLPVRQTASIFKQPVTKVTNHPSNKVKTDPQKAIDQPRQLFWEKKLSGL
ENSDARP00000131120
MBD
12
63
EEQRRERGEAGRLYSLCPTGKKFRSKPQLARSLGNSMDLSSFDFRTGKMLMS
ENSDARP00000131120
MBD
70
137
QRPRYDNNSQSKGKPDLNTSLPVRQTASIFKQPVTKVTNHPSNKVKTDPQKAIDQPRQLFWEKKLSGL
Links
Other
MBD
family TFs
Other
Danio rerio
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy