POPTR_0018s14340 (Populus trichocarpa)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01429 (MBD) IPR001739 POPTR_0018s14340 T260887_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s14340.1 MBD 173 258
POPTR_0018s14340.2 MBD 173 257
POPTR_0018s14340.3 MBD 173 258

Links

Other MBD family TFs
Other Populus trichocarpa TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.009G001500 Gossypium raimondii Gorai.009G001500 N 0.891
TCM_039691 Theobroma cacao TCM_039691 N 0.889
POPTR_0006s07730 Populus trichocarpa POPTR_0006s07730 N 0.889
SapurV1A.0001s2550 Salix purpurea SapurV1A.0001s2550 N 0.875
MBD02 Vitis vinifera VIT_11s0065g01010 N 0.873
cassava11725.valid.m1 Manihot esculenta cassava11725.valid.m1 N 0.861
evm.TU.supercontig_115.32 Carica papaya evm.TU.supercontig_115.32 N 0.861
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N 0.861
Ciclev10008843m.g Citrus clementina Ciclev10008843m.g N 0.859
Eucgr.C00067 Eucalyptus grandis Eucgr.C00067 N 0.833
orange1.1g019505m.g Citrus sinensis orange1.1g019505m.g N 0.833
Cla005887 Citrullus lanatus Cla005887 N 0.833
GLYMA07G15620 Glycine max GLYMA07G15620 N 0.833
GLYMA01G00520 Glycine max GLYMA01G00520 N 0.819
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N 0.819
mgf002635m Mimulus guttatus mgf002635m N 0.806
Ca_15552 Cicer arietinum Ca_15552 N 0.806
29843.m000288 Ricinus communis 29843.m000288 N 0.803
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N 0.792
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N 0.792
Pm008965 Prunus mume Pm008965 N 0.792
MDP0000222923 Malus domestica MDP0000222923 N 0.778
Ca_15553 Cicer arietinum Ca_15553 N 0.778
gene12231-v1.0-hybrid Fragaria vesca gene12231-v1.0-hybrid N 0.771
Lus10017146.g Linum usitatissimum Lus10017146.g N 0.764
chr2.CM0373.530.nc Lotus japonicus chr2.CM0373.530.nc N 0.764
MTR_6g093020 Medicago truncatula MTR_6g093020 N 0.764
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N 0.764
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N 0.764
Lus10021593.g Linum usitatissimum Lus10021593.g N 0.750
Bostr.29044s0085 Boechera stricta Bostr.29044s0085 N 0.736
Cucsa.209330 Cucumis sativus Cucsa.209330 N 0.722
Thhalv10003457m.g Eutrema salsugineum Thhalv10003457m.g N 0.712
Bra038936 Brassica rapa Bra038936 N 0.708
BRADI1G34320 Brachypodium distachyon BRADI1G34320 N 0.708
Bo8g030620 Brassica oleracea Bo8g030620 N 0.708
MBD02 Arabidopsis lyrata scaffold_703403.1 N 0.707
GSMUA_Achr1G23690_001 Musa acuminata GSMUA_Achr1G23690_001 N 0.702