MBD4 (Arabidopsis lyrata)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01429 (MBD) IPR001739 scaffold_503585.1 T260931_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_503585.1 MBD 82 155

Links

Other MBD family TFs
Other Arabidopsis lyrata TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MBD4 Arabidopsis thaliana AT3G63030 N 0.959
Bostr.13158s0305 Boechera stricta Bostr.13158s0305 N 0.946
Cagra.0664s0040 Capsella grandiflora Cagra.0664s0040 N 0.919
Carubv10018085m.g Capsella rubella Carubv10018085m.g N 0.919
Thhalv10006277m.g Eutrema salsugineum Thhalv10006277m.g N 0.905
Bo8g098350 Brassica oleracea Bo8g098350 N 0.892
Bra007723 Brassica rapa Bra007723 N 0.892
Thhalv10001805m.g Eutrema salsugineum Thhalv10001805m.g N 0.865
Bra040421 Brassica rapa Bra040421 N 0.849
Bo4g098290 Brassica oleracea Bo4g098290 N 0.836
MBD1 Arabidopsis lyrata scaffold_702078.1 N 0.811
Bostr.7867s0060 Boechera stricta Bostr.7867s0060 N 0.811
MBD1 Arabidopsis thaliana AT4G22745 N 0.797
Lus10027980.g Linum usitatissimum Lus10027980.g N 0.784
29703.m001533 Ricinus communis 29703.m001533 N 0.770
Lus10008176.g Linum usitatissimum Lus10008176.g N 0.770
POPTR_0014s13300 Populus trichocarpa POPTR_0014s13300 N 0.757
POPTR_0002s22900 Populus trichocarpa POPTR_0002s22900 N 0.757
SapurV1A.0053s0440 Salix purpurea SapurV1A.0053s0440 N 0.757
cassava29545.valid.m1 Manihot esculenta cassava29545.valid.m1 N 0.743
cassava29544.valid.m1 Manihot esculenta cassava29544.valid.m1 N 0.743
GLYMA10G02860 Glycine max GLYMA10G02860 N 0.730
GLYMA02G16930 Glycine max GLYMA02G16930 N 0.730
chr5.CM0909.10.nc Lotus japonicus chr5.CM0909.10.nc N 0.716
evm.TU.supercontig_9.132 Carica papaya evm.TU.supercontig_9.132 N 0.716
Lus10029631.g Linum usitatissimum Lus10029631.g N 0.716
Lus10042674.g Linum usitatissimum Lus10042674.g N 0.703