Cla012920 (Citrullus lanatus)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Cla012920 T261248_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla012920 MBD 22 95

Links

Other MBD family TFs
Other Citrullus lanatus TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.932
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N 0.811
orange1.1g022816m.g Citrus sinensis orange1.1g022816m.g N 0.808
Ciclev10025929m.g Citrus clementina Ciclev10025929m.g N 0.797
Ca_19192 Cicer arietinum Ca_19192 N 0.797
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.797
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.784
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.784
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.784
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.781
TCM_027169 Theobroma cacao TCM_027169 N 0.778
PK24888.1 Cannabis sativa PK24888.1 N 0.770
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.757
Pm027560 Prunus mume Pm027560 N 0.757
Bra016665 Brassica rapa Bra016665 N 0.757
Solyc06g068140.2 Solanum lycopersicum Solyc06g068140.2 N 0.757
Bo8g066360 Brassica oleracea Bo8g066360 N 0.757
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.757
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.757
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N 0.757
MBD11 Arabidopsis lyrata scaffold_301848.1 N 0.753
Cucsa.105420 Cucumis sativus Cucsa.105420 N 0.753
29841.m002855 Ricinus communis 29841.m002855 N 0.743
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N 0.743
MBD10 Arabidopsis thaliana AT1G15340 N 0.743
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.743
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N 0.743
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N 0.743
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.743
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N 0.743
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.741
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.740
Ca_06682 Cicer arietinum Ca_06682 N 0.740
Lus10019406.g Linum usitatissimum Lus10019406.g N 0.739
Carubv10009517m.g Capsella rubella Carubv10009517m.g N 0.730
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.730
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N 0.730
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.730
MDP0000574053 Malus domestica MDP0000574053 N 0.730
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.730
PGSC0003DMG400028533 Solanum tuberosum PGSC0003DMG400028533 N 0.730
MDP0000152128 Malus domestica MDP0000152128 N 0.730
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N 0.729
Pm013666 Prunus mume Pm013666 N 0.729
MBD11 Arabidopsis thaliana AT3G15790 N 0.726
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.716
PK04144.1 Cannabis sativa PK04144.1 N 0.716
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N 0.716
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.716
MDP0000375866 Malus domestica MDP0000375866 N 0.716
TCM_038107 Theobroma cacao TCM_038107 N 0.716
Cla015614 Citrullus lanatus Cla015614 N 0.716
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N 0.712
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N 0.707
Bra027207 Brassica rapa Bra027207 N 0.703
Bostr.28625s0113 Boechera stricta Bostr.28625s0113 N 0.703
gene15686-v1.0-hybrid Fragaria vesca gene15686-v1.0-hybrid N 0.703
MDP0000248422 Malus domestica MDP0000248422 N 0.703
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.703
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.703
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N 0.703
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.703