Cla012920 (Citrullus lanatus)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Cla012920 T261248_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla012920 MBD 22 95

Links

Other MBD family TFs
Other Citrullus lanatus TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29841.m002855 Ricinus communis 29841.m002855 N 0.743
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.740
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.730
Bo8g066360 Brassica oleracea Bo8g066360 N 0.757
Bostr.28625s0113 Boechera stricta Bostr.28625s0113 N 0.703
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N 0.716
Bra016665 Brassica rapa Bra016665 N 0.757
Bra027207 Brassica rapa Bra027207 N 0.703
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N 0.730
Carubv10009517m.g Capsella rubella Carubv10009517m.g N 0.730
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N 0.743
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N 0.743
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N 0.811
Ca_06682 Cicer arietinum Ca_06682 N 0.740
Ca_19192 Cicer arietinum Ca_19192 N 0.797
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N 0.729
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.716
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.741
Ciclev10025929m.g Citrus clementina Ciclev10025929m.g N 0.797
Cla015614 Citrullus lanatus Cla015614 N 0.716
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.932
Cucsa.105420 Cucumis sativus Cucsa.105420 N 0.753
gene15686-v1.0-hybrid Fragaria vesca gene15686-v1.0-hybrid N 0.703
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.730
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.784
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.757
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.757
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.743
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.730
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.781
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.784
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N 0.757
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.757
Lus10019406.g Linum usitatissimum Lus10019406.g N 0.739
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N 0.743
MBD10 Arabidopsis thaliana AT1G15340 N 0.743
MBD11 Arabidopsis lyrata scaffold_301848.1 N 0.753
MBD11 Arabidopsis thaliana AT3G15790 N 0.726
MDP0000152128 Malus domestica MDP0000152128 N 0.730
MDP0000248422 Malus domestica MDP0000248422 N 0.703
MDP0000375866 Malus domestica MDP0000375866 N 0.716
MDP0000574053 Malus domestica MDP0000574053 N 0.730
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.716
orange1.1g022816m.g Citrus sinensis orange1.1g022816m.g N 0.808
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.703
PGSC0003DMG400028533 Solanum tuberosum PGSC0003DMG400028533 N 0.730
PK04144.1 Cannabis sativa PK04144.1 N 0.716
PK24888.1 Cannabis sativa PK24888.1 N 0.770
Pm013666 Prunus mume Pm013666 N 0.729
Pm027560 Prunus mume Pm027560 N 0.757
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N 0.707
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.743
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.784
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N 0.712
Solyc06g068140.2 Solanum lycopersicum Solyc06g068140.2 N 0.757
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N 0.703
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.703
TCM_027169 Theobroma cacao TCM_027169 N 0.778
TCM_038107 Theobroma cacao TCM_038107 N 0.716
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N 0.743
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.797
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.703