CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava11725.valid.m1
(
Manihot esculenta
)
MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01429 (MBD)
IPR001739
cassava11725.valid.m1
T261341_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava11725.valid.m1
MBD
173
246
KPNIAQPPRGWQRLLRIRGEGSTKFADVYYESPSGKRLRSMVEIQKYLMDHPEYVQDGVTLSQFSFQIPKPLQE
Links
Other
MBD
family TFs
Other
Manihot esculenta
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0001s2550
Salix purpurea
SapurV1A.0001s2550
N
0.903
POPTR_0006s07730
Populus trichocarpa
POPTR_0006s07730
N
0.889
MBD02
Vitis vinifera
VIT_11s0065g01010
N
0.875
Eucgr.C00067
Eucalyptus grandis
Eucgr.C00067
N
0.875
evm.TU.supercontig_115.32
Carica papaya
evm.TU.supercontig_115.32
N
0.875
Ca_15552
Cicer arietinum
Ca_15552
N
0.875
POPTR_0018s14340
Populus trichocarpa
POPTR_0018s14340
N
0.861
Ciclev10008843m.g
Citrus clementina
Ciclev10008843m.g
N
0.861
TCM_039691
Theobroma cacao
TCM_039691
N
0.861
orange1.1g019505m.g
Citrus sinensis
orange1.1g019505m.g
N
0.847
29843.m000288
Ricinus communis
29843.m000288
N
0.847
Pm008965
Prunus mume
Pm008965
N
0.847
Ca_15553
Cicer arietinum
Ca_15553
N
0.847
PRUPE_ppa008652mg
Prunus persica
PRUPE_ppa008652mg
N
0.847
Lus10017146.g
Linum usitatissimum
Lus10017146.g
N
0.833
GLYMA07G15620
Glycine max
GLYMA07G15620
N
0.819
GSMUA_Achr9G14080_001
Musa acuminata
GSMUA_Achr9G14080_001
N
0.819
Aquca_018_00160
Aquilegia coerulea
Aquca_018_00160
N
0.819
mgf002635m
Mimulus guttatus
mgf002635m
N
0.806
GLYMA01G00520
Glycine max
GLYMA01G00520
N
0.806
chr2.CM0373.530.nc
Lotus japonicus
chr2.CM0373.530.nc
N
0.806
Bostr.29044s0085
Boechera stricta
Bostr.29044s0085
N
0.806
Lus10021593.g
Linum usitatissimum
Lus10021593.g
N
0.792
GSMUA_Achr3G05490_001
Musa acuminata
GSMUA_Achr3G05490_001
N
0.792
Thhalv10003457m.g
Eutrema salsugineum
Thhalv10003457m.g
N
0.792
Cla005887
Citrullus lanatus
Cla005887
N
0.792
MBD02
Arabidopsis lyrata
scaffold_703403.1
N
0.778
MTR_6g093020
Medicago truncatula
MTR_6g093020
N
0.778
MDP0000222923
Malus domestica
MDP0000222923
N
0.778
Solyc05g047450.1
Solanum lycopersicum
Solyc05g047450.1
N
0.764
PGSC0003DMG400013699
Solanum tuberosum
PGSC0003DMG400013699
N
0.764
MBD2
Arabidopsis thaliana
AT5G35330
N
0.764
Bo8g030620
Brassica oleracea
Bo8g030620
N
0.736
Bra038936
Brassica rapa
Bra038936
N
0.736
BRADI1G34320
Brachypodium distachyon
BRADI1G34320
N
0.736
gene12231-v1.0-hybrid
Fragaria vesca
gene12231-v1.0-hybrid
N
0.736
Cucsa.209330
Cucumis sativus
Cucsa.209330
N
0.712
Sb02g028780
Sorghum bicolor
Sb02g028780
N
0.708
Cagra.2178s0009
Capsella grandiflora
Cagra.2178s0009
N
0.708
Pavir.Ba01676
Panicum virgatum
Pavir.Ba01676
N
0.708