Ciclev10008843m.g (Citrus clementina)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Ciclev10008843m.g T261473_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10008840m MBD 178 250
Ciclev10008843m MBD 178 250

Links

Other MBD family TFs
Other Citrus clementina TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
chr2.CM0373.530.nc Lotus japonicus chr2.CM0373.530.nc N 0.750
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N 0.845
mgf002635m Mimulus guttatus mgf002635m N 0.817
Cucsa.209330 Cucumis sativus Cucsa.209330 N 0.746
cassava11725.valid.m1 Manihot esculenta cassava11725.valid.m1 N 0.861
29843.m000288 Ricinus communis 29843.m000288 N 0.817
Pm008965 Prunus mume Pm008965 N 0.887
Cla005887 Citrullus lanatus Cla005887 N 0.859
Ca_15553 Cicer arietinum Ca_15553 N 0.764
Ca_15552 Cicer arietinum Ca_15552 N 0.803
MBD02 Vitis vinifera VIT_11s0065g01010 N 0.887
TCM_039691 Theobroma cacao TCM_039691 N 0.859
Bostr.29044s0085 Boechera stricta Bostr.29044s0085 N 0.817
Cagra.2178s0009 Capsella grandiflora Cagra.2178s0009 N 0.718
Carubv10005368m.g Capsella rubella Carubv10005368m.g N 0.704
Thhalv10003457m.g Eutrema salsugineum Thhalv10003457m.g N 0.803
SapurV1A.0001s2550 Salix purpurea SapurV1A.0001s2550 N 0.859
Pavir.J30425 Panicum virgatum Pavir.J30425 N 0.704
orange1.1g019505m.g Citrus sinensis orange1.1g019505m.g N 0.986
MDP0000222923 Malus domestica MDP0000222923 N 0.817
Lus10021593.g Linum usitatissimum Lus10021593.g N 0.803
Lus10017146.g Linum usitatissimum Lus10017146.g N 0.789
gene12231-v1.0-hybrid Fragaria vesca gene12231-v1.0-hybrid N 0.761
evm.TU.supercontig_115.32 Carica papaya evm.TU.supercontig_115.32 N 0.873
Eucgr.C00067 Eucalyptus grandis Eucgr.C00067 N 0.845
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N 0.817
Si030613m.g Setaria italica Si030613m.g N 0.704
LPERR09G11190 Leersia perrieri LPERR09G11190 N 0.704
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N 0.831
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N 0.817
GLYMA07G15620 Glycine max GLYMA07G15620 N 0.778
GLYMA01G00520 Glycine max GLYMA01G00520 N 0.764
BRADI4G34050 Brachypodium distachyon BRADI4G34050 N 0.704
BRADI1G34320 Brachypodium distachyon BRADI1G34320 N 0.732
Bra038936 Brassica rapa Bra038936 N 0.761
Bo8g030620 Brassica oleracea Bo8g030620 N 0.761
BGIOSGA029516 Oryza indica BGIOSGA029516 N 0.704
MBD2 Arabidopsis thaliana AT5G35330 N 0.789
MTR_6g093020 Medicago truncatula MTR_6g093020 N 0.817
OB09G21610 Oryza brachyantha OB09G21610 N 0.718
OGLUM09G15680 Oryza glumaepatula OGLUM09G15680 N 0.704
MBD02 Arabidopsis lyrata scaffold_703403.1 N 0.803
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N 0.887
POPTR_0018s14340 Populus trichocarpa POPTR_0018s14340 N 0.859
POPTR_0006s07730 Populus trichocarpa POPTR_0006s07730 N 0.847
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N 0.817
OS09G0494300 Oryza sativa OS09G0494300 N 0.704
ORUFI09G16230 Oryza rufipogon ORUFI09G16230 N 0.704
OPUNC09G13490 Oryza punctata OPUNC09G13490 N 0.704
ONIVA09G15650 Oryza nivara ONIVA09G15650 N 0.704
OMERI07G04230 Oryza meridionalis OMERI07G04230 N 0.704
OLONG_025649 Oryza longistaminata OLONG_025649 N 0.704
AMTR_s00025p00196500 Amborella trichopoda AMTR_s00025p00196500 N 0.718