Pavir.Ca02859 (Panicum virgatum)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Pavir.Ca02859 T261589_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca02859.1.p MBD 48 118

Links

Other MBD family TFs
Other Panicum virgatum TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J29994 Panicum virgatum Pavir.J29994 N 0.972
ONIVA02G25900 Oryza nivara ONIVA02G25900 N 0.958
OGLUM12G20810 Oryza glumaepatula OGLUM12G20810 N 0.958
OBART12G19140 Oryza barthii OBART12G19140 N 0.958
ORGLA12G0164400 Oryza glaberrima ORGLA12G0164400 N 0.958
BGIOSGA035814 Oryza indica BGIOSGA035814 N 0.958
OS12G0620400 Oryza sativa OS12G0620400 N 0.958
ORUFI12G21360 Oryza rufipogon ORUFI12G21360 N 0.958
OMERI12G13490 Oryza meridionalis OMERI12G13490 N 0.944
OPUNC12G17310 Oryza punctata OPUNC12G17310 N 0.930
LPERR12G16300 Leersia perrieri LPERR12G16300 N 0.930
OB12G26010 Oryza brachyantha OB12G26010 N 0.915
BRADI4G21540 Brachypodium distachyon BRADI4G21540 N 0.915
Traes_5BS_19E54A2E0 Triticum aestivum Traes_5BS_19E54A2E0 N 0.859
F775_32078 Aegilops tauschii F775_32078 N 0.859
Traes_5DS_438FF99FC Triticum aestivum Traes_5DS_438FF99FC N 0.859
GRMZM2G022365 Zea mays GRMZM2G022365 N 0.859
TRIUR3_27778 Triticum urartu TRIUR3_27778 N 0.859
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.761
Sb08g022000 Sorghum bicolor Sb08g022000 N 0.761
GSMUA_Achr2G12870_001 Musa acuminata GSMUA_Achr2G12870_001 N 0.761
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.753
MDP0000574053 Malus domestica MDP0000574053 N 0.746
Pm027560 Prunus mume Pm027560 N 0.746
MDP0000152128 Malus domestica MDP0000152128 N 0.746
MDP0000375866 Malus domestica MDP0000375866 N 0.746
GSMUA_Achr7G01310_001 Musa acuminata GSMUA_Achr7G01310_001 N 0.746
Traes_5AS_BABE20FBA Triticum aestivum Traes_5AS_BABE20FBA N 0.745
Pavir.Ia01134 Panicum virgatum Pavir.Ia01134 N 0.732
Pavir.Ib04134 Panicum virgatum Pavir.Ib04134 N 0.732
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.732
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.732
Si035862m.g Setaria italica Si035862m.g N 0.732
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.718
PK04144.1 Cannabis sativa PK04144.1 N 0.718
GRMZM2G157470 Zea mays GRMZM2G157470 N 0.718
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.718