Pavir.J29994 (Panicum virgatum)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 Pavir.J29994 T261613_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J29994.1.p MBD 14 84

Links

Other MBD family TFs
Other Panicum virgatum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ca02859 Panicum virgatum Pavir.Ca02859 N 0.972
OGLUM12G20810 Oryza glumaepatula OGLUM12G20810 N 0.930
ONIVA02G25900 Oryza nivara ONIVA02G25900 N 0.930
ORUFI12G21360 Oryza rufipogon ORUFI12G21360 N 0.930
OBART12G19140 Oryza barthii OBART12G19140 N 0.930
ORGLA12G0164400 Oryza glaberrima ORGLA12G0164400 N 0.930
OS12G0620400 Oryza sativa OS12G0620400 N 0.930
BGIOSGA035814 Oryza indica BGIOSGA035814 N 0.930
OMERI12G13490 Oryza meridionalis OMERI12G13490 N 0.915
LPERR12G16300 Leersia perrieri LPERR12G16300 N 0.914
OPUNC12G17310 Oryza punctata OPUNC12G17310 N 0.901
OB12G26010 Oryza brachyantha OB12G26010 N 0.900
BRADI4G21540 Brachypodium distachyon BRADI4G21540 N 0.887
Traes_5BS_19E54A2E0 Triticum aestivum Traes_5BS_19E54A2E0 N 0.845
Traes_5DS_438FF99FC Triticum aestivum Traes_5DS_438FF99FC N 0.845
TRIUR3_27778 Triticum urartu TRIUR3_27778 N 0.845
F775_32078 Aegilops tauschii F775_32078 N 0.845
GRMZM2G022365 Zea mays GRMZM2G022365 N 0.831
Sb08g022000 Sorghum bicolor Sb08g022000 N 0.761
GSMUA_Achr2G12870_001 Musa acuminata GSMUA_Achr2G12870_001 N 0.746
GSMUA_Achr7G01310_001 Musa acuminata GSMUA_Achr7G01310_001 N 0.736
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.732
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.732
Traes_5AS_BABE20FBA Triticum aestivum Traes_5AS_BABE20FBA N 0.727
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.726
MDP0000152128 Malus domestica MDP0000152128 N 0.718
MDP0000574053 Malus domestica MDP0000574053 N 0.718
Pavir.Ib04134 Panicum virgatum Pavir.Ib04134 N 0.704
Pavir.Ia01134 Panicum virgatum Pavir.Ia01134 N 0.704
Si035862m.g Setaria italica Si035862m.g N 0.704
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.704
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.704
MDP0000375866 Malus domestica MDP0000375866 N 0.703