CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mbd3
(
Xenopus tropicalis
)
MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01429 (MBD)
IPR001739
XB-GENE-491553
T261677_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MBD2
M09256_2.00
Homo sapiens
VSGKCCGGMKR
YMKCCGGMCSB
Misc
Kulakovskiy et al.(2013)
MBD2_HUMAN.H11MO.0.B
0.733
0.733
Mbd2
M09258_2.00
Mus musculus
VSGKCCGGMKR
YMKCCGGMCSB
Misc
Kulakovskiy et al.(2013)
MBD2_MOUSE.H11MO.0.B
0.725
0.725
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH74695
MBD
1
92
MERKRWECSALPQGWKKEEVTRRSGLSAGKSDVYYYSSSPSRYNRSLRDRVGYLNTNPSGKKFRSKPQLARYLGNSMDLSTFDFRTGKMLMS
AAH74695
MBD
97
166
NRQRMRYDGLNQSKGKPDLNTALPVRQTASIFKQPVTKVTNHPTNKVKSDPQKAVDQPRQLFWEKKLSGL
CAJ82821
MBD
1
92
MERKRWECSALPQGWKKEEVTRRSGLSAGKSDVYYYSSSPSRYNRSLRDRVGYLNTNPSGKKFRSKPQLARYLGNSMDLSTFDFRTGKMLMS
CAJ82821
MBD
97
166
NRQRMRYDGLNQSKGKPDLNTALPVRQTASIFKQPVTKVTNHPTNKVKSDPQKAVDQPRQLFWEKKLSGL
Links
Other
MBD
family TFs
Other
Xenopus tropicalis
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy