Carubv10000909m.g (Capsella rubella)
mTERF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02536 (mTERF) IPR003690 Carubv10000909m.g T264638_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G23930
M06996_2.00 		Arabidopsis thaliana
HNYHDCMDYYDYMGCCGCCR
YGGCGGCKRHRRHKGHDRND		 Dap-seq
OMalley et al.(2016)
AT5G23930_col_a 		0.843 0.843
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10000909m mTERF 100 436

Links

Other mTERF family TFs
Other Capsella rubella TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0086s0019 Capsella grandiflora Cagra.0086s0019 I 0.980
fgenesh2_kg.6__2388__AT5G23930.1 Arabidopsis lyrata fgenesh2_kg.6__2388__AT5G23930.1 I 0.888
Bostr.10199s0043 Boechera stricta Bostr.10199s0043 I 0.866
AT5G23930 Arabidopsis thaliana AT5G23930 D 0.843
Bo7g097370 Brassica oleracea Bo7g097370 I 0.813
Thhalv10004187m.g Eutrema salsugineum Thhalv10004187m.g I 0.780
Bra009715 Brassica rapa Bra009715 I 0.777
Bostr.22157s0123 Boechera stricta Bostr.22157s0123 I 0.721