ATMYB54 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Al_scaffold_0002_2037 T266102_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.852 0.914
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.852 0.914
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.770 0.774
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.770 0.774
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.756 0.806
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.756 0.806
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0002_2037 Myb 6 52
Al_scaffold_0002_2037 Myb 58 103

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

382 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL004097 Aedes aegypti AAEL004097 N 0.000
AALB009972 Anopheles albimanus AALB009972 N 0.000
AARA003420 Anopheles arabiensis AARA003420 N 0.000
AATE003836 Anopheles atroparvus AATE003836 N 0.000
ACEP15313 Atta cephalotes ACEP15313 N 0.000
ACEP15314 Atta cephalotes ACEP15314 N 0.000
ACEP15330 Atta cephalotes ACEP15330 N 0.000
ACHR005166 Anopheles christyi ACHR005166 N 0.000
ACUA018116 Anopheles culicifacies ACUA018116 N 0.000
ACYPI003697 Acyrthosiphon pisum ACYPI003697 N 0.000
ADAC001260 Anopheles darlingi ADAC001260 N 0.000
ADIR000502 Anopheles dirus ADIR000502 N 0.000
AFAF001212 Anopheles farauti AFAF001212 N 0.000
AFUN009606 Anopheles funestus AFUN009606 N 0.000
AGAP012342 Anopheles gambiae AGAP012342 N 0.000
AMAM003031 Anopheles maculatus AMAM003031 N 0.000
AMEC021898 Anopheles melas AMEC021898 N 0.000
AMEM007635 Anopheles merus AMEM007635 N 0.000
AMIN009356 Anopheles minimus AMIN009356 N 0.000
AQUA002997 Anopheles quadriannulatus AQUA002997 N 0.000
ASTEI02368 Anopheles stephensi ASTEI02368 N 0.000
BGIBMGA008915 Bombyx mori BGIBMGA008915 N 0.000
BGIBMGA008965 Bombyx mori BGIBMGA008965 N 0.000
Cflo_06471--XP_001120327.1_APIME Camponotus floridanus Cflo_06471--XP_001120327.1_APIME N 0.000
Cflo_09321--XP_393312.1_APIME Camponotus floridanus Cflo_09321--XP_393312.1_APIME N 0.000
Cflo_12495--XP_001120327.1_APIME Camponotus floridanus Cflo_12495--XP_001120327.1_APIME N 0.000
CLEC002260 Cimex lectularius CLEC002260 N 0.000
CLEC002262 Cimex lectularius CLEC002262 N 0.000
CPIJ003409 Culex quinquefasciatus CPIJ003409 N 0.000
CpipJ_CPIJ003409 Culex pipiens CpipJ_CPIJ003409 N 0.000
DAPPUDRAFT_299514 Daphnia pulex DAPPUDRAFT_299514 N 0.000
DAPPUDRAFT_64307 Daphnia pulex DAPPUDRAFT_64307 N 0.000
GB43778 Apis mellifera GB43778 N 0.000
GB43788 Apis mellifera GB43788 N 0.000
HHAL003217-PA Halyomorpha halys HHAL003217-PA N 0.000
HMEL008302 Heliconius melpomene HMEL008302 N 0.000
HMEL013921 Heliconius melpomene HMEL013921 N 0.000
Hsal_08372--XP_393312.1_APIME Harpegnathos saltator Hsal_08372--XP_393312.1_APIME N 0.000
Hsal_08385--XP_001120327.1_APIME Harpegnathos saltator Hsal_08385--XP_001120327.1_APIME N 0.000
KGM_04455 Danaus plexippus KGM_04455 N 0.000
KGM_14329 Danaus plexippus KGM_14329 N 0.000
L798_10924 Zootermopsis nevadensis L798_10924 I 0.000
L798_10927 Zootermopsis nevadensis L798_10927 N 0.000
L798_10928 Zootermopsis nevadensis L798_10928 I 0.000
LDEC006635 Leptinotarsa decemlineata LDEC006635 N 0.000
LDEC006636 Leptinotarsa decemlineata LDEC006636 N 0.000
LDEC015408 Leptinotarsa decemlineata LDEC015408 N 0.000
LLOJ005066 Lutzomyia longipalpis LLOJ005066 N 0.000
LLOJ009833 Lutzomyia longipalpis LLOJ009833 N 0.000
MCINX007973 Melitaea cinxia MCINX007973 N 0.000
PHUM375920 Pediculus humanus PHUM375920 N 0.000
PHUM375930 Pediculus humanus PHUM375930 N 0.000
PPAI000981 Phlebotomus papatasi PPAI000981 N 0.000
RPRC006229 Rhodnius prolixus RPRC006229 N 0.000
SINV15880 Solenopsis invicta SINV15880 N 0.000
SINV15898 Solenopsis invicta SINV15898 N 0.000
TC005541 Tribolium castaneum TC005541 N 0.000
TC006580 Tribolium castaneum TC006580 N 0.000
YQE_12730 Dendroctonus ponderosae YQE_12730 N 0.000
YQE_12733 Dendroctonus ponderosae YQE_12733 N 0.000